The 2.0 version of rSNPBase

Variant report

Variant rs61635847
Chromosome Location chr6:1928079-1928080
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:45 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:1905000-1970600 Weak transcription Spleen Spleen
2 chr6:1905400-1962000 Weak transcription Pancreas Pancrea
3 chr6:1908400-1933600 Weak transcription Liver Liver
4 chr6:1910200-1965800 Weak transcription Small Intestine intestine
5 chr6:1914800-1930800 Strong transcription HepG2 liver
6 chr6:1915200-1934000 Weak transcription Left Ventricle heart
7 chr6:1915200-1937600 Weak transcription Esophagus oesophagus
8 chr6:1915800-1972800 Weak transcription Colonic Mucosa Colon
9 chr6:1916000-1928600 Weak transcription Rectal Mucosa Donor 31 rectum
10 chr6:1916000-1960800 Weak transcription Gastric stomach
11 chr6:1916200-1930000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
12 chr6:1916600-1935000 Weak transcription Sigmoid Colon Sigmoid Colon
13 chr6:1918000-1933600 Weak transcription Primary hematopoietic stem cells blood
14 chr6:1918200-1930200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
15 chr6:1918600-1929400 Weak transcription Breast Myoepithelial Primary Cells Breast
16 chr6:1918600-1933400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
17 chr6:1918600-1946400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
18 chr6:1918600-1957800 Weak transcription Dnd41 blood
19 chr6:1918800-1930800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
20 chr6:1919000-1928800 Weak transcription H9 Cell Line embryonic stem cell
21 chr6:1919000-1930200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
22 chr6:1919000-1933000 Weak transcription Monocytes-CD14+_RO01746 blood
23 chr6:1919200-1934400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
24 chr6:1919400-1930200 Weak transcription Aorta Aorta
25 chr6:1919600-1962400 Weak transcription Rectal Smooth Muscle rectum
26 chr6:1920200-1932000 Weak transcription Primary B cells from cord blood blood
27 chr6:1920400-1933200 Weak transcription GM12878-XiMat blood
28 chr6:1921600-1931000 Weak transcription Fetal Kidney kidney
29 chr6:1922400-1934800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
30 chr6:1924000-1952800 Weak transcription Fetal Stomach stomach
31 chr6:1924400-1941800 Weak transcription Rectal Mucosa Donor 29 rectum
32 chr6:1926200-1929200 Strong transcription Fetal Intestine Small intestine
33 chr6:1926400-1928600 Strong transcription Primary hematopoietic stem cells short term culture blood
34 chr6:1926400-1928800 Weak transcription H1 Cell Line embryonic stem cell
35 chr6:1926600-1928800 Weak transcription HUES6 Cell Line embryonic stem cell
36 chr6:1926600-1930600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
37 chr6:1926800-1932000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
38 chr6:1927600-1928200 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
39 chr6:1927600-1928400 Strong transcription Duodenum Mucosa Duodenum
40 chr6:1927800-1928200 ZNF genes & repeats Hela-S3 cervix
41 chr6:1927800-1933400 Weak transcription Primary B cells from peripheral blood blood
42 chr6:1928000-1928800 Weak transcription Fetal Intestine Large intestine
43 chr6:1928000-1932200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
44 chr6:1928000-1933600 Weak transcription Primary T cells from cord blood blood
45 chr6:1928000-1936400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived

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Last update: Aug 31, 2015