Variant report

Variant	rs7774602
Chromosome Location	chr6:1909340-1909341
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:1901619..1903388-chr6:1908460..1910593,2	MCF-7	breast:
2	chr6:1909308..1911195-chr6:1919277..1921722,2	K562	blood:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11968615	1.00[AMR][1000 genomes]
rs56088586	1.00[AMR][1000 genomes]
rs56284044	1.00[AMR][1000 genomes]
rs56347469	1.00[AMR][1000 genomes]
rs56403345	1.00[AMR][1000 genomes]
rs56808713	1.00[AMR][1000 genomes]
rs56955166	1.00[AMR][1000 genomes]
rs57499788	1.00[AMR][1000 genomes]
rs57708249	1.00[AMR][1000 genomes]
rs58263056	1.00[AMR][1000 genomes]
rs58632404	1.00[AMR][1000 genomes]
rs59618379	1.00[AMR][1000 genomes]
rs59887550	1.00[AMR][1000 genomes]
rs60523161	1.00[AMR][1000 genomes]
rs61355927	1.00[AMR][1000 genomes]
rs61635847	1.00[AMR][1000 genomes]
rs73410433	1.00[AMR][1000 genomes]
rs73412537	1.00[AMR][1000 genomes]
rs73412572	1.00[AMR][1000 genomes]
rs73412576	1.00[AMR][1000 genomes]
rs73412601	1.00[AMR][1000 genomes]
rs73414503	1.00[AMR][1000 genomes]
rs73414507	1.00[AMR][1000 genomes]
rs73417921	1.00[AMR][1000 genomes]
rs73417937	1.00[AMR][1000 genomes]
rs73417944	1.00[AMR][1000 genomes]
rs73425506	1.00[AMR][1000 genomes]
rs73425523	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73425536	1.00[AMR][1000 genomes]
rs73425551	1.00[AMR][1000 genomes]
rs73425558	1.00[AMR][1000 genomes]
rs73425566	1.00[AMR][1000 genomes]
rs73425572	1.00[AMR][1000 genomes]
rs73425577	1.00[AMR][1000 genomes]
rs73425600	1.00[AMR][1000 genomes]
rs73427359	1.00[AMR][1000 genomes]
rs73427404	1.00[AMR][1000 genomes]
rs73718508	1.00[AMR][1000 genomes]
rs7774932	0.93[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530548	chr6:1441421-2351608	Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv491607	chr6:1580681-1951526	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1020603	chr6:1697548-1921374	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv538093	chr6:1697548-1921374	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv869043	chr6:1744238-2006788	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv931941	chr6:1768439-2246781	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
7	nsv531295	chr6:1773436-2724986	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases
8	nsv883383	chr6:1775436-1918572	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv883384	chr6:1787862-1942538	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv1032149	chr6:1848148-2006021	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv883385	chr6:1869592-1915828	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv1032727	chr6:1900622-2064690	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
13	nsv538095	chr6:1900622-2064690	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:1851400-1909600	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr6:1877600-1915200	Weak transcription	Primary T cells from cord blood	blood
3	chr6:1890600-1911400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr6:1891800-1914800	Weak transcription	Colonic Mucosa	Colon
5	chr6:1895800-1910800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:1895800-1911200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:1896000-1916400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr6:1896400-1910800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:1897200-1916200	Weak transcription	Thymus	Thymus
10	chr6:1897400-1915000	Weak transcription	Esophagus	oesophagus
11	chr6:1897400-1915000	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr6:1898600-1914800	Weak transcription	Gastric	stomach
13	chr6:1901600-1923400	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr6:1902200-1910800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr6:1902400-1910800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr6:1904000-1913000	Weak transcription	Dnd41	blood
17	chr6:1904200-1910800	Weak transcription	Psoas Muscle	Psoas
18	chr6:1904400-1912200	Weak transcription	Fetal Intestine Large	intestine
19	chr6:1905000-1910200	Strong transcription	HepG2	liver
20	chr6:1905000-1910800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr6:1905000-1910800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr6:1905000-1910800	Weak transcription	Aorta	Aorta
23	chr6:1905000-1911200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr6:1905000-1970600	Weak transcription	Spleen	Spleen
25	chr6:1905200-1909400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr6:1905200-1915000	Weak transcription	Left Ventricle	heart
27	chr6:1905200-1917400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr6:1905200-1926000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr6:1905200-1926000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr6:1905400-1909800	Weak transcription	Lung	lung
31	chr6:1905400-1962000	Weak transcription	Pancreas	Pancrea
32	chr6:1905600-1914200	Weak transcription	Ovary	ovary
33	chr6:1906200-1910600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr6:1906200-1914800	Weak transcription	Fetal Intestine Small	intestine
35	chr6:1906400-1909600	Weak transcription	Duodenum Mucosa	Duodenum
36	chr6:1906600-1909600	Weak transcription	Small Intestine	intestine
37	chr6:1907000-1909400	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr6:1907200-1911200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr6:1907400-1914800	Weak transcription	Fetal Stomach	stomach
40	chr6:1908000-1915000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr6:1908000-1919800	Weak transcription	GM12878-XiMat	blood
42	chr6:1908200-1911200	Weak transcription	NHLF	lung
43	chr6:1908400-1910800	Weak transcription	Primary neutrophils fromperipheralblood	blood
44	chr6:1908400-1933600	Weak transcription	Liver	Liver
45	chr6:1908600-1910000	Enhancers	iPS-20b Cell Line	embryonic stem cell
46	chr6:1908800-1909600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
47	chr6:1908800-1909600	Enhancers	HUES48 Cell Line	embryonic stem cell
48	chr6:1908800-1909800	Enhancers	iPS-15b Cell Line	embryonic stem cell
49	chr6:1908800-1910000	Enhancers	ES-I3 Cell Line	embryonic stem cell
50	chr6:1908800-1910000	Enhancers	HUES64 Cell Line	embryonic stem cell

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