Variant report

Variant	rs61762000
Chromosome Location	chr11:17190042-17190043
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11024138	0.91[AFR][1000 genomes]
rs11024168	0.91[AFR][1000 genomes]
rs11024169	1.00[AFR][1000 genomes]
rs11024170	0.91[AFR][1000 genomes]
rs11024172	0.91[AFR][1000 genomes]
rs11024176	0.91[AFR][1000 genomes]
rs11024177	0.91[AFR][1000 genomes]
rs12275377	0.91[AFR][1000 genomes]
rs12283841	0.91[AFR][1000 genomes]
rs12285914	0.91[AFR][1000 genomes]
rs12287127	0.91[AFR][1000 genomes]
rs12288475	0.91[AFR][1000 genomes]
rs12289881	0.91[AFR][1000 genomes]
rs12291395	0.91[AFR][1000 genomes]
rs12292965	0.91[AFR][1000 genomes]
rs28544981	0.91[AFR][1000 genomes]
rs61763070	0.91[AFR][1000 genomes]
rs61763087	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467711	chr11:17027555-17320797	Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv553568	chr11:17027555-17320797	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv7691	chr11:17151593-17196894	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv469762	chr11:17170690-17320691	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	nsv482905	chr11:17170690-17320691	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17130200-17203800	Weak transcription	Aorta	Aorta
2	chr11:17144200-17192800	Weak transcription	NHDF-Ad	bronchial
3	chr11:17156600-17219200	Weak transcription	HSMMtube	muscle
4	chr11:17158000-17215600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr11:17165200-17215200	Weak transcription	Rectal Smooth Muscle	rectum
6	chr11:17166200-17190200	Weak transcription	NH-A	brain
7	chr11:17167400-17190200	Weak transcription	Fetal Muscle Trunk	muscle
8	chr11:17167400-17190400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr11:17167400-17204400	Weak transcription	Thymus	Thymus
10	chr11:17167400-17212600	Weak transcription	Stomach Smooth Muscle	stomach
11	chr11:17167400-17228000	Weak transcription	Fetal Thymus	thymus
12	chr11:17168000-17190200	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr11:17168200-17193800	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr11:17169400-17190600	Weak transcription	HSMM	muscle
15	chr11:17172600-17214600	Weak transcription	Fetal Brain Female	brain
16	chr11:17173600-17190200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr11:17176600-17190200	Weak transcription	Fetal Intestine Large	intestine
18	chr11:17176800-17190200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr11:17178800-17195000	Weak transcription	Brain Substantia Nigra	brain
20	chr11:17181400-17194400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr11:17182000-17196800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr11:17182200-17196400	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr11:17182200-17196800	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr11:17182400-17190200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr11:17184200-17191800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr11:17184400-17190200	Weak transcription	Primary T cells from cord blood	blood
27	chr11:17184400-17190200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr11:17184400-17190400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr11:17184400-17193400	Weak transcription	Colon Smooth Muscle	Colon
30	chr11:17184800-17228800	Weak transcription	Esophagus	oesophagus
31	chr11:17185200-17190200	Weak transcription	Fetal Muscle Leg	muscle
32	chr11:17185200-17195400	Weak transcription	Gastric	stomach
33	chr11:17185800-17190400	Weak transcription	Primary B cells from cord blood	blood
34	chr11:17185800-17193400	Weak transcription	Ovary	ovary
35	chr11:17185800-17207400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr11:17185800-17212800	Weak transcription	Pancreas	Pancrea
37	chr11:17186400-17191000	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr11:17186600-17190200	Weak transcription	Primary hematopoietic stem cells	blood
39	chr11:17186600-17193200	Weak transcription	Placenta	Placenta
40	chr11:17186800-17192200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
41	chr11:17186800-17192800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr11:17187000-17190200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr11:17187000-17190200	Weak transcription	Primary T helper cells PMA-I stimulated	--
44	chr11:17187000-17190200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
45	chr11:17187000-17190200	Weak transcription	Adipose Nuclei	Adipose
46	chr11:17187000-17190200	Weak transcription	NHLF	lung
47	chr11:17187000-17190400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr11:17187000-17191000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
49	chr11:17187000-17192800	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr11:17187000-17194800	Weak transcription	Brain Anterior Caudate	brain

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