Variant report

Variant	rs62434832
Chromosome Location	chr6:147201172-147201173
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:147200323..147203212-chr6:147234929..147236464,2	MCF-7	breast:
2	chr6:147199344..147201581-chr6:147203117..147205673,2	MCF-7	breast:
3	chr6:147199212..147201733-chr6:147207902..147209684,2	MCF-7	breast:
4	chr6:147201123..147203183-chr6:147520675..147522289,2	K562	blood:
5	chr6:147200700..147210109-chr6:147522792..147529002,17	K562	blood:

Variant related genes	Relation type
ENSG00000233452	Chromatin interaction
ENSG00000164506	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12660761	0.95[ASN][1000 genomes]
rs12665618	0.95[ASN][1000 genomes]
rs17076398	0.84[ASN][1000 genomes]
rs17076402	0.84[ASN][1000 genomes]
rs17076405	1.00[ASN][1000 genomes]
rs17076406	0.84[ASN][1000 genomes]
rs17076409	0.84[ASN][1000 genomes]
rs62434804	0.82[ASN][1000 genomes]
rs62434806	0.82[ASN][1000 genomes]
rs62434831	0.84[ASN][1000 genomes]
rs62434836	0.95[ASN][1000 genomes]
rs62434837	0.95[ASN][1000 genomes]
rs62434838	0.95[ASN][1000 genomes]
rs62434839	0.95[ASN][1000 genomes]
rs62434840	0.95[ASN][1000 genomes]
rs62434853	0.95[ASN][1000 genomes]
rs62434855	0.95[ASN][1000 genomes]
rs9497659	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830838	chr6:147090745-147274669	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147196800-147202200	Enhancers	Primary hematopoietic stem cells	blood
2	chr6:147197000-147201400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr6:147197800-147202200	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr6:147198000-147203000	Weak transcription	Small Intestine	intestine
5	chr6:147198200-147203600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:147198200-147205600	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr6:147198800-147202800	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr6:147199400-147201200	Enhancers	Duodenum Smooth Muscle	Duodenum
9	chr6:147199400-147202600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr6:147199600-147201400	Flanking Active TSS	K562	blood
11	chr6:147200000-147205600	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr6:147200200-147201200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr6:147200200-147201400	Weak transcription	Fetal Kidney	kidney
14	chr6:147200200-147204800	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr6:147200200-147205000	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr6:147200200-147205400	Weak transcription	Liver	Liver
17	chr6:147200200-147208600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr6:147200400-147204800	Weak transcription	Fetal Intestine Small	intestine
19	chr6:147200400-147205000	Weak transcription	Fetal Intestine Large	intestine
20	chr6:147200600-147202800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr6:147200800-147201200	Enhancers	Monocytes-CD14+_RO01746	blood
22	chr6:147200800-147203200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr6:147200800-147205000	Weak transcription	Duodenum Mucosa	Duodenum
24	chr6:147201000-147201600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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