Variant report
| Variant | rs62434855 |
|---|---|
| Chromosome Location | chr6:147242261-147242262 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:147240380..147243056-chr6:147250976..147252874,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:35)
| rs_ID | r2[population] |
|---|---|
| rs12660761 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12665618 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1324682 | 1.00[AMR][1000 genomes] |
| rs17076396 | 1.00[AMR][1000 genomes] |
| rs17076398 | 1.00[AMR][1000 genomes];0.80[ASN][1000 genomes] |
| rs17076402 | 1.00[AMR][1000 genomes];0.80[ASN][1000 genomes] |
| rs17076405 | 1.00[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs17076406 | 1.00[AMR][1000 genomes];0.80[ASN][1000 genomes] |
| rs17076409 | 1.00[AMR][1000 genomes];0.80[ASN][1000 genomes] |
| rs62434396 | 1.00[AMR][1000 genomes] |
| rs62434397 | 1.00[AMR][1000 genomes] |
| rs62434402 | 1.00[AMR][1000 genomes] |
| rs62434411 | 1.00[AMR][1000 genomes] |
| rs62434413 | 1.00[AMR][1000 genomes] |
| rs62434420 | 1.00[AMR][1000 genomes] |
| rs62434424 | 1.00[AMR][1000 genomes] |
| rs62434804 | 1.00[AMR][1000 genomes] |
| rs62434806 | 1.00[AMR][1000 genomes] |
| rs62434827 | 1.00[AMR][1000 genomes] |
| rs62434829 | 1.00[AMR][1000 genomes] |
| rs62434831 | 1.00[AMR][1000 genomes];0.80[ASN][1000 genomes] |
| rs62434832 | 0.95[ASN][1000 genomes] |
| rs62434834 | 1.00[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs62434835 | 1.00[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs62434836 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62434837 | 1.00[ASN][1000 genomes] |
| rs62434838 | 1.00[ASN][1000 genomes] |
| rs62434839 | 1.00[ASN][1000 genomes] |
| rs62434840 | 1.00[ASN][1000 genomes] |
| rs62434841 | 1.00[AMR][1000 genomes] |
| rs62434853 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62434854 | 1.00[AMR][1000 genomes];0.80[ASN][1000 genomes] |
| rs72501711 | 1.00[AMR][1000 genomes] |
| rs72501713 | 1.00[AMR][1000 genomes] |
| rs9497659 | 1.00[AMR][1000 genomes];0.80[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830838 | chr6:147090745-147274669 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 21 gene(s) | inside rSNPs | diseases |
| 2 | esv2760996 | chr6:147229457-147269633 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:147239400-147243200 | Weak transcription | K562 | blood |
