Variant report

Variant	rs62434835
Chromosome Location	chr6:147209498-147209499
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:147204253..147217184-chr6:147521370..147537831,35	K562	blood:
2	chr6:147207642..147209637-chr6:147480504..147482096,2	K562	blood:
3	chr6:147200700..147210109-chr6:147522792..147529002,17	K562	blood:
4	chr6:147206608..147209541-chr6:147294040..147296917,2	K562	blood:
5	chr6:147207096..147209923-chr6:147534752..147537140,2	K562	blood:
6	chr6:147199212..147201733-chr6:147207902..147209684,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164506	Chromatin interaction
ENSG00000233452	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs12660761	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12665618	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1324682	1.00[AMR][1000 genomes]
rs17076396	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17076398	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17076402	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17076405	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17076406	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17076409	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62434396	1.00[AMR][1000 genomes]
rs62434397	1.00[AMR][1000 genomes]
rs62434402	1.00[AMR][1000 genomes]
rs62434411	1.00[AMR][1000 genomes]
rs62434413	1.00[AMR][1000 genomes]
rs62434420	1.00[AMR][1000 genomes]
rs62434424	1.00[AMR][1000 genomes]
rs62434804	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62434806	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62434827	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62434829	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62434831	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62434834	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62434836	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62434837	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62434838	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62434839	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62434840	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62434841	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62434853	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs62434854	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs62434855	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs72501711	1.00[AMR][1000 genomes]
rs72501713	1.00[AMR][1000 genomes]
rs9497659	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830838	chr6:147090745-147274669	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147202200-147212400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr6:147203200-147212000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr6:147207000-147213000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:147207400-147212400	Weak transcription	NHDF-Ad	bronchial
5	chr6:147207600-147212000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr6:147208000-147209600	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr6:147208200-147209600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:147208600-147209600	Flanking Active TSS	K562	blood
9	chr6:147208800-147209600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr6:147208800-147212400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr6:147209200-147210000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr6:147209200-147210200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:147209200-147212400	Weak transcription	NHLF	lung
14	chr6:147209400-147211800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr6:147209400-147212400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr6:147209400-147212600	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr6:147209400-147215600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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