Variant report

Variant	rs72501711
Chromosome Location	chr6:147135455-147135456
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:147127210..147129501-chr6:147132757..147135712,3	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs12660761	1.00[AMR][1000 genomes]
rs12665618	1.00[AMR][1000 genomes]
rs1324682	1.00[AMR][1000 genomes]
rs17076305	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17076396	1.00[AMR][1000 genomes]
rs17076398	1.00[AMR][1000 genomes]
rs17076402	1.00[AMR][1000 genomes]
rs17076405	1.00[AMR][1000 genomes]
rs17076406	1.00[AMR][1000 genomes]
rs17076409	1.00[AMR][1000 genomes]
rs62434396	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62434397	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62434402	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62434411	1.00[AMR][1000 genomes]
rs62434413	1.00[AMR][1000 genomes]
rs62434420	1.00[AMR][1000 genomes]
rs62434424	1.00[AMR][1000 genomes]
rs62434804	1.00[AMR][1000 genomes]
rs62434806	1.00[AMR][1000 genomes]
rs62434827	1.00[AMR][1000 genomes]
rs62434829	1.00[AMR][1000 genomes]
rs62434831	1.00[AMR][1000 genomes]
rs62434834	1.00[AMR][1000 genomes]
rs62434835	1.00[AMR][1000 genomes]
rs62434836	1.00[AMR][1000 genomes]
rs62434841	1.00[AMR][1000 genomes]
rs62434853	1.00[AMR][1000 genomes]
rs62434854	1.00[AMR][1000 genomes]
rs62434855	1.00[AMR][1000 genomes]
rs72501713	1.00[AMR][1000 genomes]
rs9497659	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830838	chr6:147090745-147274669	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv966634	chr6:147128760-147141217	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2518343	chr6:147129690-147138004	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3526991	chr6:147130896-147137152	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3526992	chr6:147130896-147137152	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv3475079	chr6:147130951-147138090	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3475080	chr6:147130951-147138090	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv3329784	chr6:147131018-147137998	Flanking Active TSS Weak transcription Enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv3326141	chr6:147131185-147138244	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	esv3388911	chr6:147133427-147137859	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	esv3445930	chr6:147134038-147138289	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	esv3376466	chr6:147134213-147140733	Weak transcription Flanking Active TSS Enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147129600-147136800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:147130800-147137400	Weak transcription	Placenta	Placenta
3	chr6:147133200-147136200	Enhancers	NH-A	brain
4	chr6:147133400-147136000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr6:147133600-147136200	Enhancers	Osteobl	bone
6	chr6:147133800-147135600	Enhancers	Muscle Satellite Cultured Cells	--
7	chr6:147133800-147136000	Enhancers	HSMM	muscle
8	chr6:147134200-147140600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr6:147134200-147140600	Weak transcription	K562	blood
10	chr6:147134400-147136200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr6:147135000-147136200	Enhancers	Hela-S3	cervix
12	chr6:147135200-147135600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr6:147135400-147135600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr6:147135400-147135600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr6:147135400-147135800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links