Variant report

Variant	rs17076398
Chromosome Location	chr6:147192988-147192989
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:147192590..147195458-chr6:147524858..147526630,2	K562	blood:

Variant related genes	Relation type
ENSG00000164506	Chromatin interaction
ENSG00000233452	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs12660761	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12665618	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1324682	1.00[AMR][1000 genomes]
rs17076396	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17076402	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17076405	1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17076406	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17076409	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62434396	1.00[AMR][1000 genomes]
rs62434397	1.00[AMR][1000 genomes]
rs62434402	1.00[AMR][1000 genomes]
rs62434411	1.00[AMR][1000 genomes]
rs62434413	1.00[AMR][1000 genomes]
rs62434420	1.00[AMR][1000 genomes]
rs62434424	1.00[AMR][1000 genomes]
rs62434804	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62434806	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62434827	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62434829	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62434831	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62434832	0.84[ASN][1000 genomes]
rs62434834	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62434835	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62434836	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62434837	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62434838	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62434839	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62434840	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62434841	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62434853	1.00[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs62434854	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs62434855	1.00[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs72501711	1.00[AMR][1000 genomes]
rs72501713	1.00[AMR][1000 genomes]
rs9497659	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830838	chr6:147090745-147274669	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147182200-147197600	Weak transcription	Pancreas	Pancrea
2	chr6:147182800-147193000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr6:147189800-147196400	Enhancers	K562	blood
4	chr6:147190400-147193000	Weak transcription	Liver	Liver
5	chr6:147191200-147193400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:147192200-147193000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:147192200-147193400	Enhancers	Muscle Satellite Cultured Cells	--
8	chr6:147192400-147193400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr6:147192400-147195800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr6:147192400-147196600	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr6:147192400-147197000	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr6:147192400-147197400	Weak transcription	Primary B cells from peripheral blood	blood
13	chr6:147192600-147193600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr6:147192600-147196000	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr6:147192600-147196800	Weak transcription	Primary hematopoietic stem cells	blood
16	chr6:147192800-147193000	Enhancers	Esophagus	oesophagus
17	chr6:147192800-147193600	Enhancers	NHDF-Ad	bronchial
18	chr6:147192800-147193800	Enhancers	HepG2	liver

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