Variant report

Variant	rs12660761
Chromosome Location	chr6:147213453-147213454
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:147204253..147217184-chr6:147521370..147537831,35	K562	blood:
2	chr6:147211953..147214210-chr6:147481502..147484872,3	K562	blood:
3	chr6:147212479..147214139-chr6:147360412..147363401,2	K562	blood:
4	chr6:147212648..147214210-chr6:147483163..147484872,2	K562	blood:
5	chr6:147210436..147217668-chr6:147521992..147527584,13	K562	blood:

Variant related genes	Relation type
ENSG00000233452	Chromatin interaction
ENSG00000164506	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs12665618	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1324682	1.00[AMR][1000 genomes]
rs17076396	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17076398	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17076402	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17076405	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17076406	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17076409	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62434396	1.00[AMR][1000 genomes]
rs62434397	1.00[AMR][1000 genomes]
rs62434402	1.00[AMR][1000 genomes]
rs62434411	1.00[AMR][1000 genomes]
rs62434413	1.00[AMR][1000 genomes]
rs62434420	1.00[AMR][1000 genomes]
rs62434424	1.00[AMR][1000 genomes]
rs62434804	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62434806	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62434827	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62434829	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62434831	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62434832	0.95[ASN][1000 genomes]
rs62434834	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62434835	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62434836	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62434837	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62434838	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62434839	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62434840	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62434841	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62434853	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62434854	1.00[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs62434855	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72501711	1.00[AMR][1000 genomes]
rs72501713	1.00[AMR][1000 genomes]
rs9497659	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830838	chr6:147090745-147274669	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv442012	chr6:147210681-147219817	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147209400-147215600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr6:147210000-147215200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:147211800-147214000	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr6:147211800-147214400	Enhancers	HSMM	muscle
5	chr6:147211800-147214600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr6:147212000-147214200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:147212000-147215200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr6:147212000-147215800	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr6:147212200-147214600	Enhancers	Muscle Satellite Cultured Cells	--
10	chr6:147212400-147214200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr6:147212400-147214400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:147212400-147214400	Enhancers	NHDF-Ad	bronchial
13	chr6:147212400-147215000	Enhancers	Primary hematopoietic stem cells	blood
14	chr6:147212400-147215000	Enhancers	NHLF	lung
15	chr6:147212600-147214200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr6:147212600-147215000	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr6:147213000-147214200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr6:147213000-147214200	Enhancers	HSMMtube	muscle
19	chr6:147213000-147214200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
20	chr6:147213000-147214400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr6:147213000-147214400	Enhancers	Osteobl	bone
22	chr6:147213000-147214600	Flanking Active TSS	K562	blood
23	chr6:147213000-147214800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr6:147213200-147214200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr6:147213200-147214400	Enhancers	HUVEC	blood vessel
26	chr6:147213200-147214400	Enhancers	NH-A	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links