Variant report

Variant	rs12665618
Chromosome Location	chr6:147215991-147215992
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:147204253..147217184-chr6:147521370..147537831,35	K562	blood:
2	chr6:147215337..147217786-chr6:147543040..147544662,2	K562	blood:
3	chr6:147147256..147150089-chr6:147215364..147218093,2	K562	blood:
4	chr6:147210436..147217668-chr6:147521992..147527584,13	K562	blood:

Variant related genes	Relation type
ENSG00000233452	Chromatin interaction
ENSG00000164506	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs12660761	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1324682	1.00[AMR][1000 genomes]
rs17076396	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17076398	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17076402	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17076405	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17076406	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17076409	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62434396	1.00[AMR][1000 genomes]
rs62434397	1.00[AMR][1000 genomes]
rs62434402	1.00[AMR][1000 genomes]
rs62434411	1.00[AMR][1000 genomes]
rs62434413	1.00[AMR][1000 genomes]
rs62434420	1.00[AMR][1000 genomes]
rs62434424	1.00[AMR][1000 genomes]
rs62434804	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62434806	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62434827	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62434829	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62434831	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62434832	0.95[ASN][1000 genomes]
rs62434834	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62434835	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62434836	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62434837	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62434838	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62434839	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62434840	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62434841	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62434853	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62434854	1.00[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs62434855	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72501711	1.00[AMR][1000 genomes]
rs72501713	1.00[AMR][1000 genomes]
rs9497659	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830838	chr6:147090745-147274669	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv442012	chr6:147210681-147219817	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147214400-147216400	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr6:147214600-147217000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr6:147215000-147216000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr6:147215000-147217800	Weak transcription	NHLF	lung
5	chr6:147215000-147219200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr6:147215200-147217400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr6:147215200-147219600	Flanking Active TSS	K562	blood
8	chr6:147215200-147224200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:147215400-147216000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr6:147215600-147216000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr6:147215600-147216400	Enhancers	Fetal Intestine Large	intestine

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