Variant report

Variant	rs17076406
Chromosome Location	chr6:147197619-147197620
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:147195935..147198444-chr6:147269151..147270925,2	K562	blood:
2	chr6:147196025..147200245-chr6:147523517..147529134,7	K562	blood:
3	chr6:146125227..146127390-chr6:147195010..147197775,2	K562	blood:
4	chr6:147196446..147198870-chr6:147535812..147538207,2	K562	blood:

Variant related genes	Relation type
ENSG00000164506	Chromatin interaction
ENSG00000233452	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs12660761	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12665618	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1324682	1.00[AMR][1000 genomes]
rs17076396	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17076398	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17076402	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17076405	1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17076409	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62434396	1.00[AMR][1000 genomes]
rs62434397	1.00[AMR][1000 genomes]
rs62434402	1.00[AMR][1000 genomes]
rs62434411	1.00[AMR][1000 genomes]
rs62434413	1.00[AMR][1000 genomes]
rs62434420	1.00[AMR][1000 genomes]
rs62434424	1.00[AMR][1000 genomes]
rs62434804	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62434806	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62434827	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62434829	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62434831	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62434832	0.84[ASN][1000 genomes]
rs62434834	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62434835	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62434836	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62434837	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62434838	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62434839	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62434840	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62434841	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62434853	1.00[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs62434854	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs62434855	1.00[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs72501711	1.00[AMR][1000 genomes]
rs72501713	1.00[AMR][1000 genomes]
rs9497659	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830838	chr6:147090745-147274669	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147193000-147200800	Weak transcription	Esophagus	oesophagus
2	chr6:147193400-147198600	Weak transcription	Liver	Liver
3	chr6:147193600-147199600	Weak transcription	NHDF-Ad	bronchial
4	chr6:147196800-147199000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:147196800-147200800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
6	chr6:147196800-147202200	Enhancers	Primary hematopoietic stem cells	blood
7	chr6:147197000-147198600	Flanking Active TSS	K562	blood
8	chr6:147197000-147201400	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr6:147197200-147197800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr6:147197200-147198400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr6:147197200-147198800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr6:147197200-147200400	Enhancers	Fetal Intestine Small	intestine
13	chr6:147197200-147200800	Enhancers	Primary B cells from cord blood	blood
14	chr6:147197400-147197800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr6:147197400-147197800	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr6:147197400-147197800	Enhancers	Stomach Mucosa	stomach
17	chr6:147197400-147197800	Enhancers	Spleen	Spleen
18	chr6:147197400-147197800	Enhancers	A549	lung
19	chr6:147197400-147198000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr6:147197400-147198000	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chr6:147197400-147198200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr6:147197400-147198400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
23	chr6:147197400-147198400	Enhancers	Primary B cells from peripheral blood	blood
24	chr6:147197600-147197800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr6:147197600-147197800	Enhancers	Fetal Intestine Large	intestine
26	chr6:147197600-147197800	Enhancers	Pancreas	Pancrea
27	chr6:147197600-147198000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr6:147197600-147198000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr6:147197600-147198000	Enhancers	Fetal Heart	heart
30	chr6:147197600-147198000	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr6:147197600-147198000	Enhancers	Fetal Thymus	thymus
32	chr6:147197600-147198600	Enhancers	Primary hematopoietic stem cells short term culture	blood

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