Variant report

Variant	rs17076405
Chromosome Location	chr6:147196654-147196655
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:147195935..147198444-chr6:147269151..147270925,2	K562	blood:
2	chr6:147196025..147200245-chr6:147523517..147529134,7	K562	blood:
3	chr6:146125227..146127390-chr6:147195010..147197775,2	K562	blood:
4	chr6:147196446..147198870-chr6:147535812..147538207,2	K562	blood:

Variant related genes	Relation type
ENSG00000233452	Chromatin interaction
ENSG00000164506	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs12660761	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12665618	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1324682	1.00[AMR][1000 genomes]
rs17076396	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17076398	1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17076402	1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17076406	1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17076409	1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62434396	1.00[AMR][1000 genomes]
rs62434397	1.00[AMR][1000 genomes]
rs62434402	1.00[AMR][1000 genomes]
rs62434411	1.00[AMR][1000 genomes]
rs62434413	1.00[AMR][1000 genomes]
rs62434420	1.00[AMR][1000 genomes]
rs62434424	1.00[AMR][1000 genomes]
rs62434804	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62434806	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62434827	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62434829	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62434831	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62434832	1.00[ASN][1000 genomes]
rs62434834	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62434835	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62434836	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62434837	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62434838	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62434839	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62434840	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62434841	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62434853	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs62434854	1.00[AMR][1000 genomes]
rs62434855	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs72501711	1.00[AMR][1000 genomes]
rs72501713	1.00[AMR][1000 genomes]
rs9497659	1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830838	chr6:147090745-147274669	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147182200-147197600	Weak transcription	Pancreas	Pancrea
2	chr6:147192400-147197000	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr6:147192400-147197400	Weak transcription	Primary B cells from peripheral blood	blood
4	chr6:147192600-147196800	Weak transcription	Primary hematopoietic stem cells	blood
5	chr6:147193000-147200800	Weak transcription	Esophagus	oesophagus
6	chr6:147193400-147198600	Weak transcription	Liver	Liver
7	chr6:147193600-147197600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr6:147193600-147199600	Weak transcription	NHDF-Ad	bronchial
9	chr6:147194000-147197000	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr6:147195600-147197400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr6:147196000-147196800	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr6:147196400-147196800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr6:147196400-147196800	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr6:147196400-147197200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr6:147196600-147196800	Enhancers	K562	blood
16	chr6:147196600-147197400	Enhancers	Primary neutrophils fromperipheralblood	blood

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