Variant report
| Variant | rs6424406 |
|---|---|
| Chromosome Location | chr1:71326810-71326811 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:71326560..71329237-chr1:71329964..71332164,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs1327452 | 0.93[EUR][1000 genomes] |
| rs1327462 | 0.83[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs1409979 | 0.93[EUR][1000 genomes] |
| rs1409980 | 0.91[EUR][1000 genomes] |
| rs1409986 | 1.00[CEU][hapmap];0.90[EUR][1000 genomes] |
| rs1414069 | 0.85[CEU][hapmap] |
| rs1576055 | 1.00[CEU][hapmap];0.88[AMR][1000 genomes] |
| rs1591385 | 0.85[CEU][hapmap];0.91[EUR][1000 genomes] |
| rs1854149 | 0.90[EUR][1000 genomes] |
| rs2182705 | 0.84[AMR][1000 genomes] |
| rs2209747 | 0.93[EUR][1000 genomes] |
| rs2225110 | 0.93[EUR][1000 genomes] |
| rs2257713 | 0.93[EUR][1000 genomes] |
| rs2258725 | 0.91[EUR][1000 genomes] |
| rs2782785 | 0.88[EUR][1000 genomes] |
| rs3120156 | 0.88[EUR][1000 genomes] |
| rs3131375 | 0.85[CEU][hapmap];0.88[EUR][1000 genomes] |
| rs4650092 | 1.00[CEU][hapmap] |
| rs6424405 | 0.85[CEU][hapmap] |
| rs7515193 | 0.83[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs7525012 | 0.94[EUR][1000 genomes] |
| rs7551638 | 0.83[AMR][1000 genomes];0.94[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv1845198 | chr1:71274759-71514969 | Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 2 | nsv830148 | chr1:71310366-71483932 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:71326800-71327000 | Enhancers | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
