The 2.0 version of rSNPBase

Variant report

Variant rs6431690
Chromosome Location chr2:15443525-15443526
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:117 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:15371400-15468400 Weak transcription Esophagus oesophagus
2 chr2:15375000-15446000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
3 chr2:15375000-15469000 Weak transcription Psoas Muscle Psoas
4 chr2:15392400-15463400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
5 chr2:15399600-15453600 Weak transcription Brain Cingulate Gyrus brain
6 chr2:15399800-15470600 Weak transcription HUVEC blood vessel
7 chr2:15400600-15468400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
8 chr2:15400800-15456400 Weak transcription Pancreas Pancrea
9 chr2:15401200-15469600 Weak transcription Small Intestine intestine
10 chr2:15402400-15457000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
11 chr2:15407400-15450000 Weak transcription HMEC breast
12 chr2:15413800-15453600 Weak transcription Colon Smooth Muscle Colon
13 chr2:15416000-15444400 Weak transcription Brain Anterior Caudate brain
14 chr2:15416200-15478200 Weak transcription NH-A brain
15 chr2:15421000-15494800 Weak transcription Placenta Amnion Placenta Amnion
16 chr2:15422200-15446400 Weak transcription GM12878-XiMat blood
17 chr2:15424200-15446600 Weak transcription HSMM muscle
18 chr2:15424400-15452000 Weak transcription Stomach Mucosa stomach
19 chr2:15425000-15458000 Weak transcription Pancreatic Islets Pancreatic Islet
20 chr2:15426800-15473200 Weak transcription Brain Hippocampus Middle brain
21 chr2:15426800-15520000 Weak transcription Colonic Mucosa Colon
22 chr2:15427400-15451400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
23 chr2:15427400-15453400 Weak transcription Fetal Brain Female brain
24 chr2:15427400-15456600 Weak transcription HUES6 Cell Line embryonic stem cell
25 chr2:15427400-15467800 Weak transcription Primary neutrophils fromperipheralblood blood
26 chr2:15427400-15470200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
27 chr2:15427600-15467800 Weak transcription Brain Substantia Nigra brain
28 chr2:15432200-15448000 Weak transcription Placenta Placenta
29 chr2:15432800-15446000 Weak transcription HUES64 Cell Line embryonic stem cell
30 chr2:15433000-15447600 Weak transcription NHEK skin
31 chr2:15433000-15449200 Weak transcription HUES48 Cell Line embryonic stem cell
32 chr2:15433000-15449800 Weak transcription Brain Angular Gyrus brain
33 chr2:15433000-15458200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
34 chr2:15433000-15469000 Weak transcription Fetal Brain Male brain
35 chr2:15433400-15443600 Weak transcription Fetal Kidney kidney
36 chr2:15433400-15451800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
37 chr2:15435200-15446400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
38 chr2:15435800-15444400 Weak transcription Primary T regulatory cells fromperipheralblood blood
39 chr2:15436200-15444600 Strong transcription Fetal Intestine Small intestine
40 chr2:15436400-15445800 Weak transcription Primary monocytes fromperipheralblood blood
41 chr2:15437400-15468200 Weak transcription Skeletal Muscle Male skeletal muscle
42 chr2:15437600-15447600 Weak transcription Hela-S3 cervix
43 chr2:15437800-15447000 Weak transcription Rectal Mucosa Donor 29 rectum
44 chr2:15437800-15467600 Weak transcription A549 lung
45 chr2:15437800-15475800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
46 chr2:15438200-15444200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
47 chr2:15438600-15447000 Weak transcription Rectal Smooth Muscle rectum
48 chr2:15439400-15446200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
49 chr2:15439400-15467800 Weak transcription Brain Inferior Temporal Lobe brain
50 chr2:15439800-15447600 Strong transcription Breast Myoepithelial Primary Cells Breast

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Last update: Aug 31, 2015