Variant report

Variant	rs6711181
Chromosome Location	chr2:15400577-15400578
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10167186	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10181295	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10193783	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10193872	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10199552	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10199885	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10206116	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1076509	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10803672	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10929355	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10929356	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10929357	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11686627	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11892206	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11904635	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12613488	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12692259	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12993581	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12993786	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1318102	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1808361	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1974772	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1989380	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2020147	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2042144	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3755127	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3805093	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3805095	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3828463	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4465744	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4668889	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4668890	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4668891	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4668892	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4668893	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6431688	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6431689	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6431690	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6431691	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6708720	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6728767	0.82[AMR][1000 genomes]
rs6731789	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6732362	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6738994	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6746672	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6756029	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs721858	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7340328	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs741570	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7575687	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7584861	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7598652	0.96[CEU][hapmap];1.00[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7599455	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7605754	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs888636	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs929735	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs962616	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9711182	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9917271	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv515567	chr2:15004748-15906778	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv529077	chr2:15143950-15722947	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv948649	chr2:15273933-15572834	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:15352800-15402000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr2:15365000-15442400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr2:15369200-15411800	Weak transcription	HSMMtube	muscle
4	chr2:15371400-15468400	Weak transcription	Esophagus	oesophagus
5	chr2:15372800-15400600	Weak transcription	Ovary	ovary
6	chr2:15372800-15411400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr2:15372800-15414400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr2:15372800-15414400	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr2:15372800-15414400	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr2:15372800-15432600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr2:15373000-15414000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr2:15374800-15413200	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr2:15375000-15446000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr2:15375000-15469000	Weak transcription	Psoas Muscle	Psoas
15	chr2:15375200-15414400	Weak transcription	Stomach Smooth Muscle	stomach
16	chr2:15382200-15414400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr2:15383600-15414400	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr2:15384600-15415200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr2:15385600-15403000	Weak transcription	Fetal Stomach	stomach
20	chr2:15387200-15414400	Weak transcription	Lung	lung
21	chr2:15391800-15414600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr2:15392000-15411400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr2:15392200-15400600	Weak transcription	Pancreas	Pancrea
24	chr2:15392200-15411800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr2:15392400-15463400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr2:15396000-15426000	Weak transcription	Thymus	Thymus
27	chr2:15398000-15411000	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr2:15398200-15401200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr2:15398600-15401200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr2:15398600-15411600	Weak transcription	NHLF	lung
31	chr2:15399000-15400800	ZNF genes & repeats	Primary B cells from peripheral blood	blood
32	chr2:15399000-15403000	Weak transcription	Liver	Liver
33	chr2:15399200-15400800	Enhancers	iPS-15b Cell Line	embryonic stem cell
34	chr2:15399200-15400800	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
35	chr2:15399200-15402800	Enhancers	iPS-18 Cell Line	embryonic stem cell
36	chr2:15399200-15405000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr2:15399200-15415400	Weak transcription	NH-A	brain
38	chr2:15399400-15400600	Enhancers	Cortex derived primary cultured neurospheres	brain
39	chr2:15399400-15401200	Enhancers	Stomach Mucosa	stomach
40	chr2:15399600-15400600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
41	chr2:15399600-15400800	ZNF genes & repeats	Fetal Muscle Leg	muscle
42	chr2:15399600-15402200	Strong transcription	K562	blood
43	chr2:15399600-15414600	Weak transcription	Fetal Muscle Trunk	muscle
44	chr2:15399600-15426600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
45	chr2:15399600-15453600	Weak transcription	Brain Cingulate Gyrus	brain
46	chr2:15399800-15400800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr2:15399800-15400800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
48	chr2:15399800-15400800	ZNF genes & repeats	Primary B cells from cord blood	blood
49	chr2:15399800-15401400	Enhancers	H1 Cell Line	embryonic stem cell
50	chr2:15399800-15401400	Enhancers	H9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links