Variant report

Variant	rs6532827
Chromosome Location	chr4:100607633-100607634
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs13107620	1.00[ASN][1000 genomes]
rs13121590	1.00[ASN][1000 genomes]
rs1491236	1.00[ASN][1000 genomes]
rs17029282	1.00[ASN][1000 genomes]
rs17029297	1.00[ASN][1000 genomes]
rs17029357	1.00[ASN][1000 genomes]
rs17536581	1.00[ASN][1000 genomes]
rs17600994	1.00[ASN][1000 genomes]
rs34066136	1.00[ASN][1000 genomes]
rs57370858	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs71614605	1.00[ASN][1000 genomes]
rs71614609	1.00[ASN][1000 genomes]
rs7667218	1.00[ASN][1000 genomes]
rs7696714	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933074	chr4:100460951-100630600	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100601600-100608200	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr4:100605400-100608000	Weak transcription	Fetal Muscle Trunk	muscle
3	chr4:100607600-100608800	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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