Variant report

Variant	rs7696714
Chromosome Location	chr4:100588306-100588307
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs13107620	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13121590	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13129571	0.84[GIH][hapmap]
rs1491236	1.00[ASN][1000 genomes]
rs17029282	1.00[ASN][1000 genomes]
rs17029297	1.00[ASN][1000 genomes]
rs17029357	1.00[ASN][1000 genomes]
rs17536581	1.00[ASN][1000 genomes]
rs17600994	1.00[ASN][1000 genomes]
rs34066136	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6532821	0.84[GIH][hapmap]
rs6532827	1.00[ASN][1000 genomes]
rs71614605	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs71614609	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7665414	0.84[GIH][hapmap]
rs7667218	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933074	chr4:100460951-100630600	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100580000-100600400	Weak transcription	Psoas Muscle	Psoas
2	chr4:100585600-100588800	Enhancers	Fetal Lung	lung
3	chr4:100586800-100589400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr4:100588000-100589200	Weak transcription	Ovary	ovary
5	chr4:100588200-100588600	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr4:100588200-100590400	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr4:100588200-100591400	Weak transcription	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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