Variant report

Variant	rs13107620
Chromosome Location	chr4:100630419-100630420
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:100618918..100621317-chr4:100629954..100633305,3	MCF-7	breast:
2	chr4:100629054..100631992-chr4:100633105..100635868,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs13120652	0.81[AFR][1000 genomes]
rs13120855	0.81[AFR][1000 genomes]
rs13121590	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1491236	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17029260	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17029263	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17029264	0.85[AMR][1000 genomes]
rs17029282	1.00[ASN][1000 genomes]
rs17029297	1.00[ASN][1000 genomes]
rs17029357	1.00[ASN][1000 genomes]
rs17536581	1.00[ASN][1000 genomes]
rs17600994	1.00[ASN][1000 genomes]
rs34066136	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34870956	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34874297	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs35561084	0.85[AMR][1000 genomes]
rs35595171	0.85[AMR][1000 genomes]
rs6532827	1.00[ASN][1000 genomes]
rs6815796	0.81[AFR][1000 genomes]
rs6825904	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6851824	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs71614605	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71614608	0.81[AFR][1000 genomes]
rs71614609	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71614611	0.81[AFR][1000 genomes]
rs7667218	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7695727	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7696714	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs871320	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933074	chr4:100460951-100630600	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100629800-100630600	Enhancers	Psoas Muscle	Psoas
2	chr4:100630000-100631000	Weak transcription	HMEC	breast
3	chr4:100630000-100631200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links