Variant report

Variant	rs13121590
Chromosome Location	chr4:100583668-100583669
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:100581914..100583795-chr4:100869433..100871819,2	K562	blood:
2	chr4:100583097..100585455-chr4:100593424..100595570,2	MCF-7	breast:
3	chr4:100582949..100584886-chr4:100585826..100588092,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000245322	Chromatin interaction
ENSG00000164032	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs13107620	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13135675	0.84[EUR][1000 genomes]
rs13142452	0.84[EUR][1000 genomes]
rs1491236	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17029189	0.84[EUR][1000 genomes]
rs17029211	0.84[EUR][1000 genomes]
rs17029213	0.84[EUR][1000 genomes]
rs17029215	0.84[EUR][1000 genomes]
rs17029260	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17029263	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17029264	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17029282	1.00[ASN][1000 genomes]
rs17029297	1.00[ASN][1000 genomes]
rs17029357	1.00[ASN][1000 genomes]
rs17536581	1.00[ASN][1000 genomes]
rs17600994	1.00[ASN][1000 genomes]
rs34066136	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34678000	0.84[EUR][1000 genomes]
rs34734558	0.84[EUR][1000 genomes]
rs34756677	0.84[EUR][1000 genomes]
rs34870956	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34874297	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35189300	0.81[EUR][1000 genomes]
rs35391161	0.84[EUR][1000 genomes]
rs35561084	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35595171	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35661838	0.81[EUR][1000 genomes]
rs35824615	0.84[EUR][1000 genomes]
rs35826214	0.81[EUR][1000 genomes]
rs41275719	0.84[EUR][1000 genomes]
rs6532827	1.00[ASN][1000 genomes]
rs6825904	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6851824	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs71612702	0.84[EUR][1000 genomes]
rs71614603	0.84[EUR][1000 genomes]
rs71614604	0.81[EUR][1000 genomes]
rs71614605	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71614609	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71619723	0.84[EUR][1000 genomes]
rs7665414	0.84[EUR][1000 genomes]
rs7667218	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7695727	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7696714	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933074	chr4:100460951-100630600	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100580000-100586000	Weak transcription	Rectal Smooth Muscle	rectum
2	chr4:100580000-100600400	Weak transcription	Psoas Muscle	Psoas
3	chr4:100580200-100586000	Weak transcription	Ovary	ovary
4	chr4:100580600-100586600	Weak transcription	Stomach Smooth Muscle	stomach
5	chr4:100583600-100586000	Weak transcription	Fetal Heart	heart

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