Variant report

Variant	rs6553667
Chromosome Location	chr4:174008047-174008048
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs17059174	1.00[AMR][1000 genomes]
rs35336357	0.81[AFR][1000 genomes]
rs4535318	0.92[AFR][1000 genomes]
rs57769914	0.92[AFR][1000 genomes]
rs59296615	0.96[AFR][1000 genomes]
rs60380908	1.00[AMR][1000 genomes]
rs61695944	0.81[AFR][1000 genomes]
rs6856376	0.96[AFR][1000 genomes]
rs72988614	0.88[AFR][1000 genomes]
rs72988616	0.88[AFR][1000 genomes]
rs72988620	0.88[AFR][1000 genomes]
rs72988623	0.88[AFR][1000 genomes]
rs72988628	0.96[AFR][1000 genomes]
rs72988636	1.00[AFR][1000 genomes]
rs72990708	0.92[AFR][1000 genomes]
rs72990709	0.92[AFR][1000 genomes]
rs72992614	0.81[AFR][1000 genomes]
rs72992616	0.81[AFR][1000 genomes]
rs72992645	1.00[AMR][1000 genomes]
rs73003977	0.88[AFR][1000 genomes]
rs7692988	0.88[AFR][1000 genomes]
rs7697890	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174000000-174012600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:174006000-174008200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr4:174006000-174011600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr4:174006000-174012600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr4:174006600-174008400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr4:174007600-174020400	Weak transcription	Stomach Mucosa	stomach
7	chr4:174008000-174008200	ZNF genes & repeats	Pancreas	Pancrea

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links