Variant report

Variant	rs72990708
Chromosome Location	chr4:174016689-174016690
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs35336357	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4535318	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57769914	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59296615	0.96[AFR][1000 genomes]
rs61695944	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6553667	0.92[AFR][1000 genomes]
rs6856376	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72988614	0.88[AFR][1000 genomes]
rs72988616	0.88[AFR][1000 genomes]
rs72988620	0.88[AFR][1000 genomes]
rs72988623	0.88[AFR][1000 genomes]
rs72988628	0.96[AFR][1000 genomes]
rs72988636	0.92[AFR][1000 genomes]
rs72990709	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72992614	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72992616	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72992628	1.00[AMR][1000 genomes]
rs73003977	0.88[AFR][1000 genomes]
rs7692988	0.88[AFR][1000 genomes]
rs7697890	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174007600-174020400	Weak transcription	Stomach Mucosa	stomach
2	chr4:174012200-174016800	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr4:174014200-174019000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr4:174016000-174016800	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr4:174016200-174027800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr4:174016600-174020800	Weak transcription	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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