Variant report

Variant	rs72988614
Chromosome Location	chr4:173989987-173989988
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs4535318	0.88[AFR][1000 genomes]
rs57769914	0.88[AFR][1000 genomes]
rs59296615	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6553667	0.88[AFR][1000 genomes]
rs6856376	0.92[AFR][1000 genomes]
rs72988616	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72988620	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72988623	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72988628	0.92[AFR][1000 genomes]
rs72988636	0.88[AFR][1000 genomes]
rs72990708	0.88[AFR][1000 genomes]
rs72990709	0.88[AFR][1000 genomes]
rs73003977	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7692988	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7697890	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173986400-173991200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr4:173988800-173990000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:173988800-173990400	ZNF genes & repeats	Aorta	Aorta
4	chr4:173989200-173990400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
5	chr4:173989600-173991800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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