Variant report

Variant	rs7697890
Chromosome Location	chr4:173973488-173973489
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:173971610..173973525-chr4:174088588..174090849,2	MCF-7	breast:
2	chr4:173973154..173975649-chr4:173977335..173980311,2	MCF-7	breast:
3	chr4:173969259..173971236-chr4:173972699..173974468,2	K562	blood:
4	chr4:173958437..173960994-chr4:173973406..173975836,2	MCF-7	breast:
5	chr4:173969259..173971101-chr4:173972699..173974910,2	K562	blood:

Variant related genes	Relation type
ENSG00000109586	Chromatin interaction
ENSG00000245213	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs28498456	1.00[AMR][1000 genomes]
rs4535318	0.88[AFR][1000 genomes]
rs57769914	0.88[AFR][1000 genomes]
rs59296615	0.92[AFR][1000 genomes]
rs6553667	0.88[AFR][1000 genomes]
rs6856376	0.92[AFR][1000 genomes]
rs72988614	1.00[AFR][1000 genomes]
rs72988616	1.00[AFR][1000 genomes]
rs72988620	1.00[AFR][1000 genomes]
rs72988623	1.00[AFR][1000 genomes]
rs72988628	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72988636	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72990708	0.88[AFR][1000 genomes]
rs72990709	0.88[AFR][1000 genomes]
rs73003977	1.00[AFR][1000 genomes]
rs7692988	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173968400-173977200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:173971200-173975400	Weak transcription	Stomach Mucosa	stomach
3	chr4:173972200-173973600	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr4:173972800-173973600	Active TSS	Muscle Satellite Cultured Cells	--
5	chr4:173972800-173973600	Active TSS	Duodenum Smooth Muscle	Duodenum
6	chr4:173972800-173973600	Active TSS	Fetal Muscle Trunk	muscle
7	chr4:173972800-173973600	Active TSS	Right Atrium	heart
8	chr4:173972800-173973800	Active TSS	Aorta	Aorta
9	chr4:173972800-173973800	Active TSS	Osteobl	bone
10	chr4:173973000-173973600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr4:173973000-173973600	Active TSS	Brain Anterior Caudate	brain
12	chr4:173973000-173973800	Active TSS	K562	blood
13	chr4:173973000-173974000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr4:173973200-173973600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr4:173973200-173975000	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr4:173973200-173977600	Weak transcription	HSMM	muscle
17	chr4:173973200-173978600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr4:173973200-173978800	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr4:173973200-173979000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr4:173973400-173973600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr4:173973400-173973600	Active TSS	Ovary	ovary
22	chr4:173973400-173973600	Enhancers	HSMMtube	muscle
23	chr4:173973400-173974800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr4:173973400-173977200	Weak transcription	Fetal Muscle Leg	muscle
25	chr4:173973400-173977200	Weak transcription	HUVEC	blood vessel

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