Variant report

Variant	rs72988636
Chromosome Location	chr4:174002324-174002325
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs28498456	1.00[AMR][1000 genomes]
rs35336357	0.81[AFR][1000 genomes]
rs4535318	0.92[AFR][1000 genomes]
rs57769914	0.92[AFR][1000 genomes]
rs59296615	0.96[AFR][1000 genomes]
rs61695944	0.81[AFR][1000 genomes]
rs6553667	1.00[AFR][1000 genomes]
rs6856376	0.96[AFR][1000 genomes]
rs72988614	0.88[AFR][1000 genomes]
rs72988616	0.88[AFR][1000 genomes]
rs72988620	0.88[AFR][1000 genomes]
rs72988623	0.88[AFR][1000 genomes]
rs72988628	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72990708	0.92[AFR][1000 genomes]
rs72990709	0.92[AFR][1000 genomes]
rs72992614	0.81[AFR][1000 genomes]
rs72992616	0.81[AFR][1000 genomes]
rs73003977	0.88[AFR][1000 genomes]
rs7692988	0.88[AFR][1000 genomes]
rs7697890	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174000000-174012600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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