Variant report

Variant	rs72988628
Chromosome Location	chr4:173997620-173997621
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs28498456	1.00[AMR][1000 genomes]
rs35336357	0.85[AFR][1000 genomes]
rs4535318	0.96[AFR][1000 genomes]
rs57769914	0.96[AFR][1000 genomes]
rs59296615	1.00[AFR][1000 genomes]
rs61695944	0.85[AFR][1000 genomes]
rs6553667	0.96[AFR][1000 genomes]
rs6856376	1.00[AFR][1000 genomes]
rs72988614	0.92[AFR][1000 genomes]
rs72988616	0.92[AFR][1000 genomes]
rs72988620	0.92[AFR][1000 genomes]
rs72988623	0.92[AFR][1000 genomes]
rs72988636	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72990708	0.96[AFR][1000 genomes]
rs72990709	0.96[AFR][1000 genomes]
rs72992614	0.85[AFR][1000 genomes]
rs72992616	0.85[AFR][1000 genomes]
rs73003977	0.92[AFR][1000 genomes]
rs7692988	0.92[AFR][1000 genomes]
rs7697890	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173995200-173999400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr4:173996200-173998400	Weak transcription	HSMM	muscle
3	chr4:173996200-173998400	Weak transcription	HSMMtube	muscle
4	chr4:173996200-173998400	Weak transcription	NH-A	brain
5	chr4:173996400-173998200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr4:173996600-173998000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr4:173996800-173998400	Weak transcription	HMEC	breast
8	chr4:173997600-173998800	Enhancers	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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