Variant report

Variant	rs72988620
Chromosome Location	chr4:173994762-173994763
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs4535318	0.88[AFR][1000 genomes]
rs57769914	0.88[AFR][1000 genomes]
rs59296615	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6553667	0.88[AFR][1000 genomes]
rs6856376	0.92[AFR][1000 genomes]
rs72988614	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72988616	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72988623	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72988628	0.92[AFR][1000 genomes]
rs72988636	0.88[AFR][1000 genomes]
rs72990708	0.88[AFR][1000 genomes]
rs72990709	0.88[AFR][1000 genomes]
rs73003977	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7692988	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7697890	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173992400-173995600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:173992800-173996800	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr4:173993200-173996600	Enhancers	H1 Cell Line	embryonic stem cell
4	chr4:173993200-173996600	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr4:173994000-173995000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
6	chr4:173994000-173995400	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr4:173994000-173995600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr4:173994000-173996000	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr4:173994200-173996400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr4:173994200-173997000	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr4:173994600-173995000	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
12	chr4:173994600-173995200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
13	chr4:173994600-173996200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
14	chr4:173994600-173996600	Enhancers	Stomach Mucosa	stomach
15	chr4:173994600-173996800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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