Variant report

Variant	rs6672200
Chromosome Location	chr1:78225880-78225881
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr1:78224793-78225888	Raji	blood:	n/a	n/a
2	TFAP2A	chr1:78224780-78225880	Hela-S3	cervix:	n/a	chr1:78225469-78225480 chr1:78225598-78225610 chr1:78225469-78225481 chr1:78225543-78225553 chr1:78225469-78225480 chr1:78225469-78225481 chr1:78225541-78225553 chr1:78225469-78225481 chr1:78225598-78225610 chr1:78225469-78225480
3	GABPA	chr1:78224991-78225905	MCF-7	breast:	n/a	chr1:78225296-78225305
4	RELA	chr1:78224627-78225898	GM15510	blood:	n/a	n/a
5	MXI1	chr1:78224245-78226354	SK-N-SH	brain:	n/a	n/a
6	EP300	chr1:78224593-78225959	K562	blood:	n/a	chr1:78225738-78225752 chr1:78225538-78225547
7	MAZ	chr1:78224487-78226060	IMR90	lung:	n/a	chr1:78225186-78225196
8	TFAP2C	chr1:78224789-78225880	Hela-S3	cervix:	n/a	n/a
9	HCFC1	chr1:78224327-78226176	Hela-S3	cervix:	n/a	n/a
10	REST	chr1:78224277-78225933	H1-neurons	neurons:	n/a	chr1:78225571-78225584 chr1:78225458-78225471 chr1:78225623-78225636 chr1:78225007-78225025 chr1:78225315-78225328
11	MAZ	chr1:78224655-78225910	GM12878	blood:	n/a	chr1:78225186-78225196
12	MAX	chr1:78225205-78225950	NB4	blood:	n/a	n/a
13	TEAD4	chr1:78224588-78225904	K562	blood:	n/a	n/a
14	MYBL2	chr1:78225039-78225888	HepG2	liver:	n/a	n/a
15	BHLHE40	chr1:78225240-78225898	K562	blood:	n/a	chr1:78225622-78225638
16	MAZ	chr1:78224723-78225967	K562	blood:	n/a	chr1:78225186-78225196
17	MXI1	chr1:78224530-78226200	IMR90	lung:	n/a	n/a
18	TAF1	chr1:78225011-78225894	ECC-1	luminal epithelium:	n/a	n/a
19	ELK1	chr1:78225292-78226012	K562	blood:	n/a	n/a
20	POLR2A	chr1:78224683-78225881	GM12891	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr1:78193197..78195897-chr1:78225761..78227454,2	K562	blood:
2	chr1:78222274..78226935-chr1:78467368..78471641,7	K562	blood:
3	chr1:78148427..78149934-chr1:78225071..78226666,2	K562	blood:
4	chr1:78223538..78227787-chr1:78468626..78471641,9	K562	blood:
5	chr1:78220698..78225963-chr1:78243953..78247369,5	K562	blood:
6	chr1:78225774..78228799-chr1:78231164..78234244,5	K562	blood:

Variant related genes	Relation type
USP33	TF binding region
ENSG00000222849	Chromatin interaction
ENSG00000077254	Chromatin interaction
ENSG00000180488	Chromatin interaction
ENSG00000273338	Chromatin interaction
ENSG00000036549	Chromatin interaction
ENSG00000162616	Chromatin interaction

Extended variants
information (count: 110 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:99)

rs_ID	r²[population]
rs1038983	0.84[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.98[TSI][hapmap];0.85[YRI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10873953	0.91[ASN][1000 genomes]
rs10873955	1.00[CEU][hapmap];0.90[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11162365	0.82[EUR][1000 genomes]
rs11162366	0.88[EUR][1000 genomes]
rs11162369	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11162370	0.80[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs11162372	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11162378	0.81[CHB][hapmap];0.95[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs11162380	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11162383	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11162384	0.84[ASN][1000 genomes]
rs11162386	1.00[CEU][hapmap];0.90[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11162387	0.94[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.86[YRI][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11578805	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1166584	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1166586	0.89[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.86[YRI][hapmap];0.84[AFR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1166588	0.80[TSI][hapmap]
rs1166589	0.87[ASN][1000 genomes]
rs12026939	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12090729	0.84[ASN][1000 genomes]
rs12132838	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12135104	0.88[ASN][1000 genomes]
rs12142441	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12142671	0.94[CEU][hapmap];0.80[GIH][hapmap];0.92[MEX][hapmap];0.93[TSI][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12717767	0.82[EUR][1000 genomes]
rs1389789	0.85[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap]
rs1389790	0.80[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap]
rs1539739	0.90[CHB][hapmap];0.88[CHD][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs1565852	0.83[EUR][1000 genomes]
rs166770	0.80[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1977900	0.85[EUR][1000 genomes]
rs2031342	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs203229	0.80[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2088058	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs2147318	0.94[CEU][hapmap];0.87[GIH][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2274123	0.80[TSI][hapmap]
rs2296227	0.80[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs278833	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs278836	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs278837	0.84[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap]
rs278840	0.88[ASN][1000 genomes]
rs278841	0.86[ASN][1000 genomes]
rs278842	0.80[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs278843	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs278847	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs278848	0.80[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs278850	0.80[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap]
rs278854	0.94[CEU][hapmap];0.82[GIH][hapmap];0.92[MEX][hapmap];0.93[TSI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs278855	0.80[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs278856	0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs278857	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs278858	0.89[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.98[TSI][hapmap];0.85[YRI][hapmap];0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs278859	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs278860	0.83[CEU][hapmap];0.97[CHD][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs278863	0.80[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs278864	0.89[ASW][hapmap];0.94[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.98[LWK][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs366467	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs370335	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs371076	0.94[CEU][hapmap];0.80[GIH][hapmap];0.92[MEX][hapmap];0.93[TSI][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3767037	0.80[CEU][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];0.81[GIH][hapmap];0.89[JPT][hapmap];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3767038	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4488068	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4949661	0.90[EUR][1000 genomes]
rs4949814	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes]
rs4949816	0.94[CEU][hapmap];0.91[TSI][hapmap];0.82[EUR][1000 genomes]
rs4949817	0.80[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs4949818	0.80[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap]
rs4949822	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56688304	0.94[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs574973	0.80[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap]
rs6603956	0.84[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.98[TSI][hapmap];0.85[YRI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6603958	0.80[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6603960	0.80[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6657290	0.84[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.98[TSI][hapmap];0.85[YRI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6661656	0.80[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap]
rs6670660	0.90[EUR][1000 genomes]
rs6674638	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6687501	0.80[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6687596	0.97[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6691317	0.90[EUR][1000 genomes]
rs6693100	0.81[EUR][1000 genomes]
rs6698151	0.90[EUR][1000 genomes]
rs6699205	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs6699311	1.00[JPT][hapmap]
rs717333	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7519946	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7521042	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7535781	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7536206	0.84[ASN][1000 genomes]
rs7543037	0.80[CEU][hapmap];0.90[CHB][hapmap];0.88[CHD][hapmap];0.91[GIH][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs7543125	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7545175	0.90[EUR][1000 genomes]
rs7546365	0.80[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap]
rs7552291	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.84[GIH][hapmap];0.95[JPT][hapmap];0.84[MEX][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes]
rs7556227	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8179272	0.80[CEU][hapmap];0.90[CHB][hapmap];0.86[CHD][hapmap];0.81[GIH][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs872342	0.80[CEU][hapmap];0.85[JPT][hapmap]
rs9662527	0.89[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];0.85[YRI][hapmap];0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470719	chr1:77774413-78269207	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv546591	chr1:77774413-78269207	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv830303	chr1:78090824-78308765	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	esv1794082	chr1:78102426-78492221	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	108 gene(s)	inside rSNPs	diseases
5	esv1796958	chr1:78138955-78267421	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	esv1798160	chr1:78149941-78267421	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
7	esv3434340	chr1:78153780-78607103	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
8	nsv508326	chr1:78184379-78234247	Weak transcription Genic enhancers Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
9	nsv1004327	chr1:78212804-78352385	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
10	nsv1006600	chr1:78222312-78384009	Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
11	nsv535011	chr1:78222312-78384009	Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs6672200	AK5	cis	parietal	SCAN
rs6672200	PIGK	cis	parietal	SCAN
rs6672200	USP33	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:78223200-78226000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr1:78223400-78226000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr1:78223400-78226000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:78223400-78226000	Active TSS	NHDF-Ad	bronchial
5	chr1:78224000-78226000	Active TSS	Breast Myoepithelial Primary Cells	Breast
6	chr1:78224000-78226000	Active TSS	Pancreatic Islets	Pancreatic Islet
7	chr1:78224000-78226000	Active TSS	Stomach Smooth Muscle	stomach
8	chr1:78224000-78226000	Active TSS	HSMMtube	muscle
9	chr1:78224200-78226000	Active TSS	Brain Hippocampus Middle	brain
10	chr1:78224200-78226000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
11	chr1:78224200-78226000	Active TSS	Fetal Brain Male	brain
12	chr1:78224200-78226000	Active TSS	Skeletal Muscle Female	skeletal muscle
13	chr1:78224400-78226000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr1:78224400-78226000	Active TSS	Fetal Kidney	kidney
15	chr1:78224600-78226000	Active TSS	Primary T regulatory cells fromperipheralblood	blood
16	chr1:78224600-78226000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr1:78224600-78226000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr1:78224600-78226000	Active TSS	Thymus	Thymus
19	chr1:78224600-78226000	Active TSS	Monocytes-CD14+_RO01746	blood
20	chr1:78224600-78226000	Active TSS	Osteobl	bone
21	chr1:78224800-78226000	Active TSS	Primary T cells fromperipheralblood	blood
22	chr1:78224800-78226000	Active TSS	Colon Smooth Muscle	Colon
23	chr1:78224800-78226000	Active TSS	Rectal Smooth Muscle	rectum
24	chr1:78225400-78226000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr1:78225600-78226000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
26	chr1:78225600-78226000	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr1:78225600-78226000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
28	chr1:78225600-78226000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr1:78225600-78226000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
30	chr1:78225600-78226000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
31	chr1:78225600-78226000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
32	chr1:78225600-78226000	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr1:78225600-78226000	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
34	chr1:78225600-78226000	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
35	chr1:78225600-78226000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr1:78225600-78226000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr1:78225600-78226000	Flanking Active TSS	Brain Cingulate Gyrus	brain
38	chr1:78225600-78226000	Flanking Active TSS	Dnd41	blood
39	chr1:78225600-78226000	Flanking Active TSS	GM12878-XiMat	blood
40	chr1:78225600-78226000	Flanking Active TSS	HMEC	breast
41	chr1:78225600-78226000	Flanking Active TSS	K562	blood
42	chr1:78225600-78227400	Weak transcription	Stomach Mucosa	stomach
43	chr1:78225800-78226000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr1:78225800-78226000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
45	chr1:78225800-78226000	Enhancers	HUES6 Cell Line	embryonic stem cell
46	chr1:78225800-78226000	Enhancers	Primary B cells from peripheral blood	blood
47	chr1:78225800-78226000	Flanking Active TSS	Primary T cells from cord blood	blood
48	chr1:78225800-78226000	Enhancers	Primary hematopoietic stem cells	blood
49	chr1:78225800-78226000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
50	chr1:78225800-78226000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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