The 2.0 version of rSNPBase

Variant report

Variant rs278843
Chromosome Location chr1:78150634-78150635
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:117 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:78149600-78175000 Weak transcription Gastric stomach
2 chr1:78149600-78177800 Weak transcription Spleen Spleen
3 chr1:78149800-78151200 Enhancers Breast Myoepithelial Primary Cells Breast
4 chr1:78149800-78151200 Enhancers Fetal Muscle Leg muscle
5 chr1:78149800-78151800 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
6 chr1:78149800-78152600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
7 chr1:78149800-78152600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
8 chr1:78149800-78152600 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
9 chr1:78149800-78153000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
10 chr1:78149800-78153000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
11 chr1:78149800-78153000 Weak transcription Placenta Amnion Placenta Amnion
12 chr1:78149800-78153200 Weak transcription Primary T regulatory cells fromperipheralblood blood
13 chr1:78149800-78153200 Weak transcription Placenta Placenta
14 chr1:78149800-78153200 Weak transcription Right Atrium heart
15 chr1:78149800-78153400 Weak transcription Primary neutrophils fromperipheralblood blood
16 chr1:78149800-78157400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
17 chr1:78149800-78157600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
18 chr1:78149800-78158800 Weak transcription Left Ventricle heart
19 chr1:78149800-78159800 Weak transcription Primary T cells fromperipheralblood blood
20 chr1:78149800-78165600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
21 chr1:78149800-78165600 Weak transcription Esophagus oesophagus
22 chr1:78149800-78165600 Weak transcription Lung lung
23 chr1:78149800-78171800 Weak transcription Fetal Brain Male brain
24 chr1:78149800-78173000 Weak transcription Colonic Mucosa Colon
25 chr1:78149800-78173800 Weak transcription Aorta Aorta
26 chr1:78149800-78178000 Weak transcription Small Intestine intestine
27 chr1:78150000-78151000 Enhancers Primary hematopoietic stem cells short term culture blood
28 chr1:78150000-78151200 Enhancers Skeletal Muscle Female skeletal muscle
29 chr1:78150000-78152600 Weak transcription H9 Cell Line embryonic stem cell
30 chr1:78150000-78153400 Weak transcription Primary monocytes fromperipheralblood blood
31 chr1:78150000-78153400 Weak transcription Duodenum Smooth Muscle Duodenum
32 chr1:78150000-78153400 Weak transcription Fetal Kidney kidney
33 chr1:78150000-78153400 Weak transcription Monocytes-CD14+_RO01746 blood
34 chr1:78150000-78158600 Weak transcription Rectal Mucosa Donor 31 rectum
35 chr1:78150000-78158800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
36 chr1:78150000-78158800 Weak transcription Fetal Brain Female brain
37 chr1:78150000-78160800 Weak transcription Primary T helper naive cells fromperipheralblood blood
38 chr1:78150000-78160800 Weak transcription Sigmoid Colon Sigmoid Colon
39 chr1:78150000-78161600 Weak transcription Brain Cingulate Gyrus brain
40 chr1:78150000-78162000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
41 chr1:78150000-78163000 Weak transcription Stomach Smooth Muscle stomach
42 chr1:78150000-78165200 Weak transcription Brain Angular Gyrus brain
43 chr1:78150000-78166000 Weak transcription HSMMtube muscle
44 chr1:78150000-78172800 Weak transcription Colon Smooth Muscle Colon
45 chr1:78150000-78173000 Weak transcription Primary T helper naive cells from peripheral blood blood
46 chr1:78150000-78173000 Weak transcription Primary T killer naive cells fromperipheralblood blood
47 chr1:78150000-78173600 Weak transcription Psoas Muscle Psoas
48 chr1:78150000-78174000 Weak transcription Primary T killer memory cells from peripheral blood blood
49 chr1:78150000-78175600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
50 chr1:78150200-78150800 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin

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Last update: Aug 31, 2015