The 2.0 version of rSNPBase

Variant report

Variant rs11162368
Chromosome Location chr1:78074662-78074663
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:84 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:78047600-78074800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
2 chr1:78047600-78085600 Weak transcription NHLF lung
3 chr1:78047800-78074800 Weak transcription iPS-20b Cell Line embryonic stem cell
4 chr1:78047800-78086200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
5 chr1:78047800-78090000 Weak transcription NH-A brain
6 chr1:78048000-78077800 Weak transcription Placenta Amnion Placenta Amnion
7 chr1:78048000-78097400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
8 chr1:78050000-78075000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
9 chr1:78054000-78074800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
10 chr1:78058000-78074800 Weak transcription Brain Germinal Matrix brain
11 chr1:78059000-78083200 Weak transcription Sigmoid Colon Sigmoid Colon
12 chr1:78063200-78083000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
13 chr1:78063600-78074800 Weak transcription Primary T helper naive cells fromperipheralblood blood
14 chr1:78063600-78075000 Weak transcription Dnd41 blood
15 chr1:78063600-78097600 Weak transcription Fetal Brain Male brain
16 chr1:78064200-78075200 Weak transcription HepG2 liver
17 chr1:78070600-78098000 Weak transcription Rectal Smooth Muscle rectum
18 chr1:78071000-78075200 Weak transcription H1 Cell Line embryonic stem cell
19 chr1:78071000-78098000 Weak transcription Colonic Mucosa Colon
20 chr1:78071200-78085600 Weak transcription HUVEC blood vessel
21 chr1:78071200-78098000 Weak transcription Small Intestine intestine
22 chr1:78071400-78097800 Weak transcription Aorta Aorta
23 chr1:78071800-78074800 Weak transcription Cortex derived primary cultured neurospheres brain
24 chr1:78071800-78082800 Weak transcription Osteobl bone
25 chr1:78071800-78097800 Weak transcription Ovary ovary
26 chr1:78071800-78097800 Weak transcription Pancreas Pancrea
27 chr1:78072000-78074800 Weak transcription Skeletal Muscle Male skeletal muscle
28 chr1:78072000-78075000 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
29 chr1:78072000-78080600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
30 chr1:78072000-78094600 Weak transcription Left Ventricle heart
31 chr1:78072000-78097600 Weak transcription Gastric stomach
32 chr1:78072200-78083400 Weak transcription Thymus Thymus
33 chr1:78072200-78086400 Weak transcription HMEC breast
34 chr1:78072200-78090600 Weak transcription Primary monocytes fromperipheralblood blood
35 chr1:78072200-78098000 Weak transcription Spleen Spleen
36 chr1:78072400-78075000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
37 chr1:78072400-78075000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
38 chr1:78072400-78087200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
39 chr1:78072400-78097800 Weak transcription Lung lung
40 chr1:78072600-78075000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
41 chr1:78072600-78080600 Weak transcription HSMM muscle
42 chr1:78072600-78086200 Weak transcription Fetal Thymus thymus
43 chr1:78072600-78097800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
44 chr1:78072800-78086400 Weak transcription Fetal Kidney kidney
45 chr1:78073000-78090000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
46 chr1:78073200-78074800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
47 chr1:78073200-78097400 Weak transcription Stomach Smooth Muscle stomach
48 chr1:78073600-78075400 ZNF genes & repeats Primary hematopoietic stem cells blood
49 chr1:78073600-78076000 ZNF genes & repeats Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
50 chr1:78073600-78076400 ZNF genes & repeats Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived

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Last update: Aug 31, 2015