The 2.0 version of rSNPBase

Variant report

Variant rs11162374
Chromosome Location chr1:78101584-78101585
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:124 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:78076400-78113000 Weak transcription Psoas Muscle Psoas
2 chr1:78085400-78104600 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
3 chr1:78086400-78104400 Weak transcription Stomach Mucosa stomach
4 chr1:78089800-78107400 Strong transcription Primary B cells from cord blood blood
5 chr1:78090000-78102800 Strong transcription Osteobl bone
6 chr1:78090000-78104000 Strong transcription HSMM muscle
7 chr1:78090200-78107400 Strong transcription Monocytes-CD14+_RO01746 blood
8 chr1:78092800-78107400 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
9 chr1:78093800-78102800 Strong transcription Primary monocytes fromperipheralblood blood
10 chr1:78094200-78105000 Strong transcription Primary T cells from cord blood blood
11 chr1:78094200-78107400 Strong transcription Primary Natural Killer cells fromperipheralblood blood
12 chr1:78094400-78107200 Strong transcription Fetal Thymus thymus
13 chr1:78094600-78102800 Strong transcription Primary T regulatory cells fromperipheralblood blood
14 chr1:78094800-78113600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
15 chr1:78095800-78102400 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
16 chr1:78096200-78102000 Weak transcription Fetal Stomach stomach
17 chr1:78096200-78110400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
18 chr1:78096200-78111000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
19 chr1:78096600-78102600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
20 chr1:78097200-78104400 Strong transcription Primary T cells fromperipheralblood blood
21 chr1:78097800-78102600 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
22 chr1:78098200-78102200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
23 chr1:78098400-78105800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
24 chr1:78098400-78113400 Weak transcription Pancreas Pancrea
25 chr1:78098400-78116800 Weak transcription Right Ventricle heart
26 chr1:78098600-78103200 Weak transcription Pancreatic Islets Pancreatic Islet
27 chr1:78098600-78104400 Weak transcription Brain Angular Gyrus brain
28 chr1:78098600-78106600 Weak transcription Brain Cingulate Gyrus brain
29 chr1:78098600-78110600 Weak transcription Lung lung
30 chr1:78098600-78111400 Weak transcription Brain Germinal Matrix brain
31 chr1:78098600-78113200 Weak transcription H9 Cell Line embryonic stem cell
32 chr1:78098800-78103200 Weak transcription Fetal Lung lung
33 chr1:78098800-78103800 Weak transcription HSMMtube muscle
34 chr1:78098800-78104600 Weak transcription A549 lung
35 chr1:78098800-78106400 Weak transcription Brain Substantia Nigra brain
36 chr1:78098800-78106600 Weak transcription Brain Hippocampus Middle brain
37 chr1:78098800-78106600 Weak transcription Brain Inferior Temporal Lobe brain
38 chr1:78098800-78108000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
39 chr1:78098800-78110200 Weak transcription Primary T killer naive cells fromperipheralblood blood
40 chr1:78098800-78110600 Weak transcription Primary T helper naive cells from peripheral blood blood
41 chr1:78099000-78102000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
42 chr1:78099000-78103800 Weak transcription Fetal Heart heart
43 chr1:78099000-78108000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
44 chr1:78099000-78108200 Weak transcription Colonic Mucosa Colon
45 chr1:78099000-78110200 Weak transcription Placenta Placenta
46 chr1:78099000-78110600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
47 chr1:78099000-78110600 Weak transcription Esophagus oesophagus
48 chr1:78099000-78110600 Weak transcription Ovary ovary
49 chr1:78099000-78110600 Weak transcription Sigmoid Colon Sigmoid Colon
50 chr1:78099000-78110600 Weak transcription Thymus Thymus

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Last update: Aug 31, 2015