Variant report

Variant	rs6907926
Chromosome Location	chr6:77773778-77773779
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:77756209..77758349-chr6:77773587..77775917,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1022755	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10943406	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1159587	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1322097	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1322098	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1407321	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1548240	0.86[AMR][1000 genomes]
rs1575243	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1581732	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1590260	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2143642	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2143643	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2206821	0.88[AMR][1000 genomes]
rs4235901	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4706644	0.86[AMR][1000 genomes]
rs6901496	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6907323	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6914793	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6919268	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6933303	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs722891	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7453360	0.83[AMR][1000 genomes]
rs756398	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7752717	0.86[AMR][1000 genomes]
rs7757663	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9341640	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9343555	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs978286	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs982569	0.86[AMR][1000 genomes]
rs982570	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019520	chr6:77355212-77875164	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv538321	chr6:77355212-77875164	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1017082	chr6:77585310-78258237	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv603806	chr6:77587889-77787815	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1021812	chr6:77589219-77792085	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1030186	chr6:77606604-77781304	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1026517	chr6:77622310-77827418	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	esv3417770	chr6:77670473-77963253	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	esv3402238	chr6:77670497-77963278	Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv1022311	chr6:77684420-77941524	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv886223	chr6:77686247-77950949	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv603807	chr6:77734250-77807794	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
13	nsv1033731	chr6:77750293-77941524	Genic enhancers Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	nsv538323	chr6:77750293-77941524	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	nsv534282	chr6:77764575-78351994	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:77773200-77773800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:77773200-77773800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:77773200-77773800	ZNF genes & repeats	Esophagus	oesophagus
4	chr6:77773200-77773800	ZNF genes & repeats	Gastric	stomach
5	chr6:77773400-77773800	ZNF genes & repeats	Aorta	Aorta
6	chr6:77773600-77773800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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