Variant report

Variant	rs71352701
Chromosome Location	chr18:24372040-24372041
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11659207	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12954845	1.00[AFR][1000 genomes]
rs12965167	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12970160	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17611328	0.80[AMR][1000 genomes]
rs17684326	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1839319	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34047317	1.00[AFR][1000 genomes]
rs34315959	1.00[AFR][1000 genomes]
rs34775621	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34909051	1.00[AFR][1000 genomes]
rs35531875	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35601155	1.00[AFR][1000 genomes]
rs548220	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs66522730	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs66950491	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs66985226	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs67384004	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs67918306	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761995	chr18:24214286-24502570	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:24365400-24372600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr18:24371400-24372400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr18:24371400-24372600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr18:24371600-24372200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr18:24371600-24372400	Enhancers	NHEK	skin
6	chr18:24371600-24372800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr18:24371600-24373000	Enhancers	HMEC	breast
8	chr18:24371600-24374600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr18:24371800-24372200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr18:24371800-24372200	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr18:24371800-24372400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr18:24371800-24372600	Enhancers	NH-A	brain
13	chr18:24371800-24373000	Enhancers	A549	lung
14	chr18:24372000-24372200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr18:24372000-24373000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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