Variant report

Variant	rs7212275
Chromosome Location	chr17:16952595-16952596
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:16950816..16952722-chr17:16954932..16957698,2	MCF-7	breast:
2	chr17:16950670..16953293-chr17:16954639..16957612,2	K562	blood:
3	chr17:16944176..16948439-chr17:16950883..16955441,5	K562	blood:
4	chr17:16943909..16948439-chr17:16949478..16955691,9	K562	blood:

Variant related genes	Relation type
ENSG00000133030	Chromatin interaction

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10852844	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10852846	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11078368	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11078371	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11078372	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11078373	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1110505	0.83[EUR][1000 genomes]
rs11551189	0.80[ASN][1000 genomes]
rs11651938	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11652678	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11654887	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11657189	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11870035	0.82[ASN][1000 genomes]
rs11870422	0.82[ASN][1000 genomes]
rs11870483	0.91[ASN][1000 genomes]
rs11870997	0.82[ASN][1000 genomes]
rs12451343	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12452303	0.96[AMR][1000 genomes]
rs12601422	0.86[ASN][1000 genomes]
rs12602124	0.96[AMR][1000 genomes]
rs12602583	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12602592	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12602839	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12603417	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1567815	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2292526	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2349645	0.82[ASN][1000 genomes]
rs2349648	0.91[ASN][1000 genomes]
rs28452405	0.92[ASN][1000 genomes]
rs34001712	0.92[ASN][1000 genomes]
rs35650871	0.96[ASN][1000 genomes]
rs3744125	0.80[EUR][1000 genomes]
rs3744127	0.80[EUR][1000 genomes]
rs3744131	0.80[ASN][1000 genomes]
rs3744132	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3744136	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3744137	0.82[ASN][1000 genomes]
rs3744138	0.82[ASN][1000 genomes]
rs3744139	0.82[ASN][1000 genomes]
rs4073688	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4073940	0.96[AMR][1000 genomes]
rs4074612	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4074819	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4283273	0.80[EUR][1000 genomes]
rs4321246	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4468683	0.92[ASN][1000 genomes]
rs4589617	0.84[ASN][1000 genomes]
rs4629023	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4641803	0.87[ASN][1000 genomes]
rs4985703	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4985704	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4985715	0.96[AMR][1000 genomes]
rs4985716	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4985721	0.92[ASN][1000 genomes]
rs4985723	0.96[AMR][1000 genomes]
rs4985728	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4985730	0.91[ASN][1000 genomes]
rs4985737	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4985742	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4985743	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56133536	0.82[ASN][1000 genomes]
rs57729820	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs58326998	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59394251	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60128647	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61242604	0.94[ASN][1000 genomes]
rs7214429	0.80[ASN][1000 genomes]
rs7216677	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7223924	0.96[AMR][1000 genomes]
rs73979060	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73979078	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8066111	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8069259	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8071254	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8076273	0.88[ASN][1000 genomes]
rs8077360	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9892695	0.88[ASN][1000 genomes]
rs9893676	0.80[ASN][1000 genomes]
rs9897510	0.80[ASN][1000 genomes]
rs9906028	0.96[ASN][1000 genomes]
rs9907109	0.91[ASN][1000 genomes]
rs9910857	0.82[ASN][1000 genomes]

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:16947400-16954000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr17:16947600-16960200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr17:16947800-16955200	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr17:16948400-16958600	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr17:16948600-16958800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr17:16948600-16959000	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr17:16948800-16958800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr17:16949000-16952600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr17:16949000-16952600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr17:16949000-16952800	Enhancers	Right Atrium	heart
11	chr17:16949000-16953200	Enhancers	Fetal Muscle Leg	muscle
12	chr17:16949000-16954000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr17:16949000-16954000	Weak transcription	Colonic Mucosa	Colon
14	chr17:16949000-16954000	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr17:16949000-16954000	Weak transcription	Thymus	Thymus
16	chr17:16949000-16954200	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr17:16949000-16954600	Weak transcription	Gastric	stomach
18	chr17:16949000-16954800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr17:16949000-16955000	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr17:16949000-16955000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr17:16949000-16956000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr17:16949000-16956200	Weak transcription	Fetal Brain Female	brain
23	chr17:16949000-16957600	Enhancers	NHDF-Ad	bronchial
24	chr17:16949000-16958400	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr17:16949000-16962000	Enhancers	Fetal Heart	heart
26	chr17:16949000-16966200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr17:16949000-16975200	Weak transcription	K562	blood
28	chr17:16949200-16952800	Enhancers	Adipose Nuclei	Adipose
29	chr17:16949200-16954000	Weak transcription	Primary monocytes fromperipheralblood	blood
30	chr17:16949200-16954000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr17:16949200-16954000	Weak transcription	Placenta	Placenta
32	chr17:16949200-16954000	Weak transcription	Monocytes-CD14+_RO01746	blood
33	chr17:16949200-16954800	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr17:16949200-16955000	Weak transcription	NH-A	brain
35	chr17:16949400-16953600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr17:16949600-16953200	Enhancers	Breast Myoepithelial Primary Cells	Breast
37	chr17:16949600-16953800	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr17:16949600-16953800	Weak transcription	HepG2	liver
39	chr17:16949600-16954800	Weak transcription	HUVEC	blood vessel
40	chr17:16949800-16953200	Enhancers	Skeletal Muscle Female	skeletal muscle
41	chr17:16949800-16953800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr17:16949800-16953800	Weak transcription	Fetal Stomach	stomach
43	chr17:16949800-16953800	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr17:16950200-16955800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr17:16950200-16955800	Weak transcription	Brain Germinal Matrix	brain
46	chr17:16950200-16962600	Weak transcription	Dnd41	blood
47	chr17:16950200-16968200	Enhancers	Psoas Muscle	Psoas
48	chr17:16950600-16955400	Genic enhancers	Hela-S3	cervix
49	chr17:16950800-16952800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr17:16950800-16952800	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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