Variant report

Variant	rs7223924
Chromosome Location	chr17:16968251-16968252
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:16955910..16958218-chr17:16967140..16970023,2	MCF-7	breast:
2	chr17:16962310..16965177-chr17:16967176..16969489,2	MCF-7	breast:
3	chr17:16958058..16960902-chr17:16966512..16968421,3	MCF-7	breast:
4	chr17:16966782..16968541-chr17:16972398..16974708,2	MCF-7	breast:

Extended variants
information (count: 86 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs10852843	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10852845	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11078364	0.88[ASN][1000 genomes]
rs11078365	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11078366	1.00[CHB][hapmap];0.91[JPT][hapmap];0.97[ASN][1000 genomes]
rs11078370	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11078375	1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs11651460	0.82[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs11651988	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11652674	0.81[EUR][1000 genomes]
rs11652756	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11652936	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11654247	0.85[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs11654360	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11654562	0.90[CHB][hapmap];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11654887	0.86[AMR][1000 genomes]
rs11657189	0.86[AMR][1000 genomes]
rs11658084	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11658904	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12450109	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12450213	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12450238	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12450467	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12451054	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12451343	0.96[AMR][1000 genomes]
rs12452303	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12601325	0.85[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs12602124	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12602129	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12602583	0.80[AMR][1000 genomes]
rs12602592	0.86[AMR][1000 genomes]
rs12602839	0.94[AMR][1000 genomes]
rs12602867	0.81[EUR][1000 genomes]
rs1567815	0.86[AMR][1000 genomes]
rs16961288	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16961412	1.00[CHB][hapmap]
rs1877631	1.00[CHB][hapmap]
rs3744133	0.82[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs3744140	1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs4073940	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4074611	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4264448	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4275916	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4606773	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4621033	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4629023	0.92[YRI][hapmap];0.96[AMR][1000 genomes]
rs4985695	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4985697	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4985698	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4985704	0.86[AMR][1000 genomes]
rs4985712	0.92[ASN][1000 genomes]
rs4985714	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4985715	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4985716	0.96[AMR][1000 genomes]
rs4985719	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4985723	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4985727	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4985737	0.86[AMR][1000 genomes]
rs4985739	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs4985742	0.86[AMR][1000 genomes]
rs4985743	0.86[AMR][1000 genomes]
rs55751545	0.81[EUR][1000 genomes]
rs56009207	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58472573	0.93[ASN][1000 genomes]
rs58814183	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7207187	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7210339	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7212275	0.96[AMR][1000 genomes]
rs7216677	0.86[AMR][1000 genomes]
rs7217970	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs7223583	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7223686	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.97[ASN][1000 genomes]
rs73979053	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73979054	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73979058	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73979061	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73979081	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73979082	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73979083	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8064991	0.81[EUR][1000 genomes]
rs8067563	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8069259	0.86[AMR][1000 genomes]
rs8071254	0.96[AMR][1000 genomes]
rs8075751	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs8077360	0.86[AMR][1000 genomes]
rs9910011	0.92[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7223924	M-RIP	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:16949000-16975200	Weak transcription	K562	blood
2	chr17:16952600-16996400	Weak transcription	Fetal Brain Male	brain
3	chr17:16954800-16981200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr17:16955400-16970200	Weak transcription	NH-A	brain
5	chr17:16955400-16981200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr17:16956400-16972600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr17:16959200-16982200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr17:16959400-16972800	Weak transcription	HUVEC	blood vessel
9	chr17:16959600-16979800	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr17:16959600-16992000	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr17:16960800-16976400	Weak transcription	Aorta	Aorta
12	chr17:16961000-16970600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr17:16961600-16968400	Enhancers	Right Ventricle	heart
14	chr17:16961600-16977200	Weak transcription	Rectal Smooth Muscle	rectum
15	chr17:16961800-16968400	Enhancers	Brain Anterior Caudate	brain
16	chr17:16962000-16968800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
17	chr17:16962600-16968600	Enhancers	Brain Hippocampus Middle	brain
18	chr17:16962800-16968400	Genic enhancers	A549	lung
19	chr17:16963200-16968400	Enhancers	Brain Cingulate Gyrus	brain
20	chr17:16964400-16973600	Weak transcription	HepG2	liver
21	chr17:16964400-16974200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr17:16964800-16968400	Genic enhancers	Osteobl	bone
23	chr17:16964800-16969600	Enhancers	Primary T helper cells PMA-I stimulated	--
24	chr17:16965000-16968400	Enhancers	Brain Angular Gyrus	brain
25	chr17:16965000-16975400	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr17:16965200-16973000	Weak transcription	GM12878-XiMat	blood
27	chr17:16965600-16968400	Genic enhancers	Muscle Satellite Cultured Cells	--
28	chr17:16965600-16968400	Enhancers	Brain Substantia Nigra	brain
29	chr17:16966200-16968400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr17:16966200-16970400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
31	chr17:16966200-16980800	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr17:16966400-16973400	Weak transcription	Fetal Brain Female	brain
33	chr17:16966400-16975000	Weak transcription	Brain Germinal Matrix	brain
34	chr17:16966600-16968400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
35	chr17:16966800-16970200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr17:16966800-16975600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr17:16967000-16968800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr17:16967000-16973200	Weak transcription	Primary hematopoietic stem cells	blood
39	chr17:16967200-16968400	Enhancers	Brain Inferior Temporal Lobe	brain
40	chr17:16967200-16969000	Enhancers	Skeletal Muscle Female	skeletal muscle
41	chr17:16967200-16969600	Strong transcription	NHEK	skin
42	chr17:16967200-16970200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr17:16967200-16972800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr17:16967200-16974200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr17:16967200-16974200	Weak transcription	Dnd41	blood
46	chr17:16967400-16968600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr17:16967400-16968800	Enhancers	Skeletal Muscle Male	skeletal muscle
48	chr17:16967400-16969000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
49	chr17:16967400-16969200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr17:16967400-16969400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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