Variant report

Variant	rs11654360
Chromosome Location	chr17:16960290-16960291
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:16945357..16947606-chr17:16959220..16962216,2	K562	blood:
2	chr17:16959720..16962081-chr17:16964608..16966842,2	K562	blood:
3	chr17:16958058..16960902-chr17:16966512..16968421,3	MCF-7	breast:
4	chr17:16944990..16949876-chr17:16959315..16962454,4	MCF-7	breast:
5	chr17:16958422..16961495-chr17:16962516..16966035,3	MCF-7	breast:
6	chr17:16953800..16956981-chr17:16958258..16961708,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000133030	Chromatin interaction

Extended variants
information (count: 99 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:99)

rs_ID	r²[population]
rs1047805	0.86[AMR][1000 genomes]
rs10852843	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10852844	0.90[AMR][1000 genomes]
rs10852845	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10852846	0.86[AMR][1000 genomes]
rs11078364	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11078365	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11078366	0.97[ASN][1000 genomes]
rs11078370	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11078371	0.90[AMR][1000 genomes]
rs11078372	0.90[AMR][1000 genomes]
rs11078373	0.86[AMR][1000 genomes]
rs11078375	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1110504	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1110505	0.86[AMR][1000 genomes]
rs11651460	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11651938	0.86[AMR][1000 genomes]
rs11651988	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11652079	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11652674	0.87[EUR][1000 genomes]
rs11652678	0.86[AMR][1000 genomes]
rs11652756	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11652936	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11654247	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11654562	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11658084	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11658904	0.95[ASN][1000 genomes]
rs12450109	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12450213	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12450238	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12450467	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12451054	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12452303	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12452802	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12601325	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12602124	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12602129	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12602867	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16961288	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16961412	0.83[AMR][1000 genomes]
rs2292526	0.91[AMR][1000 genomes]
rs3744125	0.86[AMR][1000 genomes]
rs3744127	0.86[AMR][1000 genomes]
rs3744132	0.86[AMR][1000 genomes]
rs3744133	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3744136	0.86[AMR][1000 genomes]
rs3744140	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3826305	0.84[AMR][1000 genomes]
rs4073940	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4074611	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4074612	0.90[AMR][1000 genomes]
rs4074819	0.86[AMR][1000 genomes]
rs4264448	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4275916	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4283273	0.86[AMR][1000 genomes]
rs4321246	0.82[AMR][1000 genomes]
rs4606773	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4621033	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4985695	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4985697	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4985698	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4985703	0.86[AMR][1000 genomes]
rs4985712	0.92[ASN][1000 genomes]
rs4985714	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4985715	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4985719	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4985723	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4985727	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4985739	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4985744	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4985747	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs55751545	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56009207	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57812549	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs58326998	0.86[AMR][1000 genomes]
rs58472573	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58814183	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59394251	0.86[AMR][1000 genomes]
rs60128647	0.90[AMR][1000 genomes]
rs61018209	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7207187	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7210339	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7217970	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7223583	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7223686	0.97[ASN][1000 genomes]
rs7223924	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73979053	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73979054	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73979058	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73979060	0.90[AMR][1000 genomes]
rs73979061	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73979081	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73979082	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73979083	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8064991	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8066111	0.86[AMR][1000 genomes]
rs8067563	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8075751	0.92[ASN][1000 genomes]
rs9910011	0.92[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11654360	M-RIP	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:16949000-16962000	Enhancers	Fetal Heart	heart
2	chr17:16949000-16966200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr17:16949000-16975200	Weak transcription	K562	blood
4	chr17:16950200-16962600	Weak transcription	Dnd41	blood
5	chr17:16950200-16968200	Enhancers	Psoas Muscle	Psoas
6	chr17:16952600-16996400	Weak transcription	Fetal Brain Male	brain
7	chr17:16953600-16960600	Enhancers	Left Ventricle	heart
8	chr17:16953600-16967600	Genic enhancers	Fetal Muscle Trunk	muscle
9	chr17:16953800-16960400	Enhancers	Ovary	ovary
10	chr17:16953800-16960800	Enhancers	Spleen	Spleen
11	chr17:16953800-16961000	Enhancers	Right Atrium	heart
12	chr17:16953800-16961800	Genic enhancers	A549	lung
13	chr17:16954200-16961000	Enhancers	Stomach Mucosa	stomach
14	chr17:16954200-16962200	Genic enhancers	Fetal Stomach	stomach
15	chr17:16954800-16981200	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr17:16955400-16970200	Weak transcription	NH-A	brain
17	chr17:16955400-16981200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr17:16956400-16972600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr17:16956600-16960800	Weak transcription	HepG2	liver
20	chr17:16956600-16961400	Weak transcription	GM12878-XiMat	blood
21	chr17:16956600-16965600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr17:16956600-16966200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr17:16956800-16960600	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr17:16956800-16966000	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr17:16957000-16960600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr17:16957000-16962400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr17:16957200-16960400	Enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr17:16957200-16960400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr17:16957200-16962800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr17:16957200-16964800	Weak transcription	Primary T helper cells PMA-I stimulated	--
31	chr17:16957200-16965800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr17:16957400-16960400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr17:16957400-16963200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr17:16957400-16965000	Weak transcription	Primary B cells from cord blood	blood
35	chr17:16957600-16962200	Enhancers	Colon Smooth Muscle	Colon
36	chr17:16957600-16964000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
37	chr17:16957800-16960600	Weak transcription	Primary B cells from peripheral blood	blood
38	chr17:16957800-16963800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr17:16958000-16960400	Enhancers	Lung	lung
40	chr17:16958200-16961000	Enhancers	HSMMtube	muscle
41	chr17:16958400-16960400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr17:16958400-16960600	Enhancers	Duodenum Smooth Muscle	Duodenum
43	chr17:16958400-16960600	Enhancers	Placenta Amnion	Placenta Amnion
44	chr17:16958400-16960800	Enhancers	Aorta	Aorta
45	chr17:16958400-16961000	Enhancers	Brain Substantia Nigra	brain
46	chr17:16958600-16960400	Enhancers	Brain Angular Gyrus	brain
47	chr17:16958600-16960400	Enhancers	Brain Hippocampus Middle	brain
48	chr17:16958600-16960600	Enhancers	Rectal Smooth Muscle	rectum
49	chr17:16958600-16960800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr17:16958600-16960800	Enhancers	Esophagus	oesophagus

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