Variant report

Variant	rs7223583
Chromosome Location	chr17:16967980-16967981
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:16955910..16958218-chr17:16967140..16970023,2	MCF-7	breast:
2	chr17:16962310..16965177-chr17:16967176..16969489,2	MCF-7	breast:
3	chr17:16958058..16960902-chr17:16966512..16968421,3	MCF-7	breast:
4	chr17:16966782..16968541-chr17:16972398..16974708,2	MCF-7	breast:

Extended variants
information (count: 100 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:100)

rs_ID	r²[population]
rs1047805	0.90[AMR][1000 genomes]
rs10852843	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10852844	0.95[AMR][1000 genomes]
rs10852845	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10852846	0.90[AMR][1000 genomes]
rs11078364	0.93[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11078365	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11078366	0.97[ASN][1000 genomes]
rs11078370	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11078371	0.95[AMR][1000 genomes]
rs11078372	0.95[AMR][1000 genomes]
rs11078373	0.90[AMR][1000 genomes]
rs11078375	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1110504	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1110505	0.90[AMR][1000 genomes]
rs11651460	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11651938	0.90[AMR][1000 genomes]
rs11651988	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11652079	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11652674	0.87[EUR][1000 genomes]
rs11652678	0.90[AMR][1000 genomes]
rs11652756	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11652936	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11654247	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11654360	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11654562	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11658084	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11658904	0.95[ASN][1000 genomes]
rs12450109	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12450213	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12450238	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12450467	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12451054	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12452303	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12452802	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12601325	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12602124	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12602129	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12602867	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16961288	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16961412	0.88[AMR][1000 genomes]
rs2292526	0.86[AMR][1000 genomes]
rs3744125	0.90[AMR][1000 genomes]
rs3744127	0.90[AMR][1000 genomes]
rs3744132	0.90[AMR][1000 genomes]
rs3744133	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3744136	0.90[AMR][1000 genomes]
rs3744140	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3826305	0.88[AMR][1000 genomes]
rs4073940	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4074611	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4074612	0.95[AMR][1000 genomes]
rs4074819	0.90[AMR][1000 genomes]
rs4264448	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4275916	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4283273	0.90[AMR][1000 genomes]
rs4321246	0.86[AMR][1000 genomes]
rs4606773	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4621033	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4985695	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4985697	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4985698	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4985703	0.90[AMR][1000 genomes]
rs4985712	0.92[ASN][1000 genomes]
rs4985714	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4985715	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4985719	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4985723	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4985727	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4985739	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4985744	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4985747	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs55751545	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56009207	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57812549	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs58326998	0.90[AMR][1000 genomes]
rs58472573	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58814183	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59394251	0.90[AMR][1000 genomes]
rs60128647	0.95[AMR][1000 genomes]
rs61018209	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7207187	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7210339	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7217970	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7223686	0.97[ASN][1000 genomes]
rs7223924	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73979053	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73979054	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73979055	0.96[AFR][1000 genomes]
rs73979058	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73979060	0.95[AMR][1000 genomes]
rs73979061	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73979081	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73979082	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73979083	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8064991	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8066111	0.90[AMR][1000 genomes]
rs8067563	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8075751	0.92[ASN][1000 genomes]
rs9910011	0.92[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7223583	M-RIP	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:16949000-16975200	Weak transcription	K562	blood
2	chr17:16950200-16968200	Enhancers	Psoas Muscle	Psoas
3	chr17:16952600-16996400	Weak transcription	Fetal Brain Male	brain
4	chr17:16954800-16981200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr17:16955400-16970200	Weak transcription	NH-A	brain
6	chr17:16955400-16981200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr17:16956400-16972600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr17:16959200-16982200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr17:16959400-16972800	Weak transcription	HUVEC	blood vessel
10	chr17:16959600-16979800	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr17:16959600-16992000	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr17:16960800-16976400	Weak transcription	Aorta	Aorta
13	chr17:16961000-16968200	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr17:16961000-16970600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr17:16961600-16968400	Enhancers	Right Ventricle	heart
16	chr17:16961600-16977200	Weak transcription	Rectal Smooth Muscle	rectum
17	chr17:16961800-16968400	Enhancers	Brain Anterior Caudate	brain
18	chr17:16962000-16968800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
19	chr17:16962200-16968000	Strong transcription	Fetal Stomach	stomach
20	chr17:16962600-16968600	Enhancers	Brain Hippocampus Middle	brain
21	chr17:16962800-16968000	Enhancers	Left Ventricle	heart
22	chr17:16962800-16968200	Enhancers	Adipose Nuclei	Adipose
23	chr17:16962800-16968400	Genic enhancers	A549	lung
24	chr17:16963200-16968000	Enhancers	Right Atrium	heart
25	chr17:16963200-16968400	Enhancers	Brain Cingulate Gyrus	brain
26	chr17:16963400-16968200	Enhancers	Liver	Liver
27	chr17:16963800-16968000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
28	chr17:16964400-16973600	Weak transcription	HepG2	liver
29	chr17:16964400-16974200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr17:16964800-16968000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr17:16964800-16968000	Genic enhancers	NHLF	lung
32	chr17:16964800-16968400	Genic enhancers	Osteobl	bone
33	chr17:16964800-16969600	Enhancers	Primary T helper cells PMA-I stimulated	--
34	chr17:16965000-16968400	Enhancers	Brain Angular Gyrus	brain
35	chr17:16965000-16975400	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr17:16965200-16968000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr17:16965200-16968200	Genic enhancers	HSMM	muscle
38	chr17:16965200-16973000	Weak transcription	GM12878-XiMat	blood
39	chr17:16965600-16968000	Enhancers	NHDF-Ad	bronchial
40	chr17:16965600-16968400	Genic enhancers	Muscle Satellite Cultured Cells	--
41	chr17:16965600-16968400	Enhancers	Brain Substantia Nigra	brain
42	chr17:16965800-16968000	Enhancers	Monocytes-CD14+_RO01746	blood
43	chr17:16966000-16968000	Enhancers	Primary monocytes fromperipheralblood	blood
44	chr17:16966000-16968000	Enhancers	Primary T cells fromperipheralblood	blood
45	chr17:16966000-16968000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
46	chr17:16966000-16968000	Enhancers	Colon Smooth Muscle	Colon
47	chr17:16966000-16968200	Enhancers	Fetal Heart	heart
48	chr17:16966200-16968000	Enhancers	Primary T helper naive cells from peripheral blood	blood
49	chr17:16966200-16968400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr17:16966200-16970400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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