Variant report

Variant	rs11078366
Chromosome Location	chr17:16950883-16950884
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:16950816..16952722-chr17:16954932..16957698,2	MCF-7	breast:
2	chr17:16947403..16948944-chr17:16950340..16952252,2	MCF-7	breast:
3	chr17:16922009..16924326-chr17:16949178..16951661,2	MCF-7	breast:
4	chr17:16950670..16953293-chr17:16954639..16957612,2	K562	blood:
5	chr17:16944176..16948439-chr17:16950883..16955441,5	K562	blood:
6	chr17:16943909..16948439-chr17:16949478..16955691,9	K562	blood:
7	chr17:16948833..16952528-chr17:16954016..16957501,7	K562	blood:

Variant related genes	Relation type
ENSG00000133030	Chromatin interaction

Extended variants
information (count: 70 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10852843	1.00[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs10852845	0.88[ASN][1000 genomes]
rs11078364	0.88[ASN][1000 genomes]
rs11078365	0.92[ASN][1000 genomes]
rs11078370	1.00[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs11078371	0.88[MEX][hapmap]
rs11078373	0.88[MEX][hapmap]
rs11078375	1.00[CHB][hapmap]
rs11651460	1.00[CHB][hapmap];0.96[CHD][hapmap];0.88[MEX][hapmap]
rs11651988	0.97[ASN][1000 genomes]
rs11652756	0.93[ASN][1000 genomes]
rs11652936	0.90[ASN][1000 genomes]
rs11654247	1.00[CHB][hapmap]
rs11654360	0.97[ASN][1000 genomes]
rs11654562	0.90[CHB][hapmap];0.95[ASN][1000 genomes]
rs11658084	1.00[CHB][hapmap];0.96[CHD][hapmap];0.91[JPT][hapmap];0.88[MEX][hapmap];0.97[ASN][1000 genomes]
rs11658904	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[JPT][hapmap];0.97[LWK][hapmap];0.91[MKK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs12450109	0.93[ASN][1000 genomes]
rs12450213	0.88[ASN][1000 genomes]
rs12450238	0.92[ASN][1000 genomes]
rs12450467	1.00[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs12451054	0.90[ASN][1000 genomes]
rs12452303	0.93[ASN][1000 genomes]
rs12601325	1.00[CHB][hapmap]
rs12602124	0.97[ASN][1000 genomes]
rs12602129	0.97[ASN][1000 genomes]
rs16961288	1.00[CHB][hapmap];0.91[JPT][hapmap];0.99[ASN][1000 genomes]
rs16961412	1.00[CHB][hapmap];0.96[CHD][hapmap];0.88[MEX][hapmap]
rs1877631	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3744132	0.88[MEX][hapmap]
rs3744133	1.00[CHB][hapmap];0.96[CHD][hapmap];0.88[MEX][hapmap]
rs3744140	1.00[CHB][hapmap];0.96[CHD][hapmap];0.88[MEX][hapmap]
rs4073940	1.00[CHB][hapmap];0.96[CHD][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs4074611	1.00[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs4264448	1.00[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs4275916	0.90[ASN][1000 genomes]
rs4589617	0.85[EUR][1000 genomes]
rs4606773	1.00[CHB][hapmap];0.96[CHD][hapmap];0.91[JPT][hapmap];0.88[MEX][hapmap];0.90[ASN][1000 genomes]
rs4621033	0.90[ASN][1000 genomes]
rs4641803	0.82[EUR][1000 genomes]
rs4985695	0.90[ASN][1000 genomes]
rs4985697	0.90[ASN][1000 genomes]
rs4985698	0.88[ASN][1000 genomes]
rs4985712	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4985714	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[JPT][hapmap];0.88[MEX][hapmap];0.99[ASN][1000 genomes]
rs4985715	1.00[CHB][hapmap];0.91[JPT][hapmap];0.97[ASN][1000 genomes]
rs4985719	1.00[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs4985723	0.89[ASN][1000 genomes]
rs4985727	0.90[ASN][1000 genomes]
rs4985739	1.00[CHB][hapmap];0.96[CHD][hapmap];0.88[MEX][hapmap]
rs56009207	0.97[ASN][1000 genomes]
rs58472573	0.90[ASN][1000 genomes]
rs58814183	0.99[ASN][1000 genomes]
rs7207187	1.00[CHB][hapmap];0.91[JPT][hapmap];0.97[ASN][1000 genomes]
rs7210339	1.00[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs7217970	1.00[CHB][hapmap];0.96[CHD][hapmap];0.88[MEX][hapmap]
rs7223583	0.97[ASN][1000 genomes]
rs7223686	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[JPT][hapmap];0.95[ASN][1000 genomes]
rs7223924	0.97[ASN][1000 genomes]
rs73979053	0.92[ASN][1000 genomes]
rs73979054	0.95[ASN][1000 genomes]
rs73979058	0.99[ASN][1000 genomes]
rs73979061	0.90[ASN][1000 genomes]
rs73979081	0.90[ASN][1000 genomes]
rs73979082	0.90[ASN][1000 genomes]
rs73979083	0.90[ASN][1000 genomes]
rs8067563	1.00[CHB][hapmap];0.89[JPT][hapmap];0.90[ASN][1000 genomes]
rs8073851	0.87[CEU][hapmap]
rs8075751	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.80[TSI][hapmap];0.82[YRI][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9910011	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs11078366	TOM1L2	cis	cerebellum	SCAN
rs11078366	M-RIP	Cis_1M	lymphoblastoid	RTeQTL
rs11078366	MPRIP	cis	lymphoblastoid	seeQTL

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:16947400-16954000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr17:16947600-16951200	Enhancers	Liver	Liver
3	chr17:16947600-16960200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr17:16947800-16955200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr17:16948400-16958600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr17:16948600-16952000	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr17:16948600-16958800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr17:16948600-16959000	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr17:16948800-16951800	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr17:16948800-16958800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr17:16949000-16951000	Weak transcription	Spleen	Spleen
12	chr17:16949000-16951200	Weak transcription	Duodenum Mucosa	Duodenum
13	chr17:16949000-16951200	Weak transcription	Esophagus	oesophagus
14	chr17:16949000-16951400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr17:16949000-16951800	Enhancers	Fetal Muscle Trunk	muscle
16	chr17:16949000-16952000	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr17:16949000-16952000	Weak transcription	Fetal Intestine Large	intestine
18	chr17:16949000-16952400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
19	chr17:16949000-16952400	Enhancers	NHLF	lung
20	chr17:16949000-16952600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
21	chr17:16949000-16952600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
22	chr17:16949000-16952800	Enhancers	Right Atrium	heart
23	chr17:16949000-16953200	Enhancers	Fetal Muscle Leg	muscle
24	chr17:16949000-16954000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr17:16949000-16954000	Weak transcription	Colonic Mucosa	Colon
26	chr17:16949000-16954000	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr17:16949000-16954000	Weak transcription	Thymus	Thymus
28	chr17:16949000-16954200	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr17:16949000-16954600	Weak transcription	Gastric	stomach
30	chr17:16949000-16954800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr17:16949000-16955000	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr17:16949000-16955000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr17:16949000-16956000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr17:16949000-16956200	Weak transcription	Fetal Brain Female	brain
35	chr17:16949000-16957600	Enhancers	NHDF-Ad	bronchial
36	chr17:16949000-16958400	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr17:16949000-16962000	Enhancers	Fetal Heart	heart
38	chr17:16949000-16966200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
39	chr17:16949000-16975200	Weak transcription	K562	blood
40	chr17:16949200-16951000	Weak transcription	Primary T cells fromperipheralblood	blood
41	chr17:16949200-16951000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr17:16949200-16951000	Weak transcription	Fetal Thymus	thymus
43	chr17:16949200-16951200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr17:16949200-16951200	Weak transcription	Fetal Lung	lung
45	chr17:16949200-16951200	Weak transcription	Stomach Smooth Muscle	stomach
46	chr17:16949200-16951400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr17:16949200-16952800	Enhancers	Adipose Nuclei	Adipose
48	chr17:16949200-16954000	Weak transcription	Primary monocytes fromperipheralblood	blood
49	chr17:16949200-16954000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr17:16949200-16954000	Weak transcription	Placenta	Placenta

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