Variant report

Variant	rs73979082
Chromosome Location	chr17:17001340-17001341
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:16992481..16994529-chr17:17001211..17003120,2	MCF-7	breast:
2	chr17:16992165..16993827-chr17:16999457..17002093,2	K562	blood:
3	chr17:17000263..17003828-chr17:17006059..17008926,3	MCF-7	breast:
4	chr17:16989031..16991528-chr17:17000273..17002775,2	MCF-7	breast:

Extended variants
information (count: 102 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:101)

rs_ID	r²[population]
rs1047805	0.90[AMR][1000 genomes]
rs10852843	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10852844	0.95[AMR][1000 genomes]
rs10852845	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10852846	0.90[AMR][1000 genomes]
rs11078364	0.93[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11078365	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11078366	0.90[ASN][1000 genomes]
rs11078370	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11078371	0.95[AMR][1000 genomes]
rs11078372	0.95[AMR][1000 genomes]
rs11078373	0.90[AMR][1000 genomes]
rs11078375	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1110504	0.95[AMR][1000 genomes]
rs1110505	0.90[AMR][1000 genomes]
rs11651460	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11651938	0.90[AMR][1000 genomes]
rs11651988	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11652079	0.95[AMR][1000 genomes]
rs11652674	0.84[EUR][1000 genomes]
rs11652678	0.90[AMR][1000 genomes]
rs11652756	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11652936	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11654247	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11654360	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11654562	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11658084	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11658904	0.88[ASN][1000 genomes]
rs12450109	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12450213	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12450238	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12450467	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12451054	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12452303	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12452802	0.95[AMR][1000 genomes]
rs12601325	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12602124	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12602129	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12602867	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16961288	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16961412	0.88[AMR][1000 genomes]
rs1877631	0.82[ASN][1000 genomes]
rs2292526	0.86[AMR][1000 genomes]
rs3744125	0.90[AMR][1000 genomes]
rs3744127	0.90[AMR][1000 genomes]
rs3744132	0.90[AMR][1000 genomes]
rs3744133	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3744136	0.90[AMR][1000 genomes]
rs3744140	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3826305	0.88[AMR][1000 genomes]
rs4073940	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4074611	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4074612	0.95[AMR][1000 genomes]
rs4074819	0.90[AMR][1000 genomes]
rs4264448	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4275916	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4283273	0.90[AMR][1000 genomes]
rs4321246	0.86[AMR][1000 genomes]
rs4606773	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4621033	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4985695	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4985697	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4985698	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4985703	0.90[AMR][1000 genomes]
rs4985712	0.85[ASN][1000 genomes]
rs4985714	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4985715	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4985719	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4985723	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4985727	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4985739	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs4985744	0.95[AMR][1000 genomes]
rs4985747	0.90[AMR][1000 genomes]
rs55751545	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56009207	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57812549	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs58326998	0.90[AMR][1000 genomes]
rs58472573	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58814183	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59394251	0.90[AMR][1000 genomes]
rs60128647	0.95[AMR][1000 genomes]
rs61018209	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs7207187	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7210339	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7217970	0.95[AMR][1000 genomes]
rs7223583	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7223686	0.90[ASN][1000 genomes]
rs7223924	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73979053	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73979054	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73979055	0.96[AFR][1000 genomes]
rs73979058	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73979060	0.95[AMR][1000 genomes]
rs73979061	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73979081	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73979083	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8064991	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8066111	0.90[AMR][1000 genomes]
rs8067563	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8075751	0.85[ASN][1000 genomes]
rs9910011	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059280	chr17:16975059-17017957	Enhancers Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:16986800-17013600	Weak transcription	HUVEC	blood vessel
2	chr17:16992400-17010000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr17:16993200-17003800	Genic enhancers	Fetal Intestine Small	intestine
4	chr17:16993400-17011400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr17:16994600-17003400	Enhancers	Ovary	ovary
6	chr17:16994600-17011600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr17:16995400-17001600	Weak transcription	Brain Germinal Matrix	brain
8	chr17:16995400-17002400	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr17:16996400-17006200	Weak transcription	Liver	Liver
10	chr17:16997000-17016600	Enhancers	Left Ventricle	heart
11	chr17:16997200-17005000	Weak transcription	K562	blood
12	chr17:16997400-17006200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr17:16997400-17010000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr17:16998000-17003600	Genic enhancers	Fetal Stomach	stomach
15	chr17:16998200-17002800	Enhancers	NHDF-Ad	bronchial
16	chr17:16998200-17016200	Enhancers	Fetal Heart	heart
17	chr17:16998400-17001600	Enhancers	Fetal Intestine Large	intestine
18	chr17:16998400-17002600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr17:16998400-17002600	Enhancers	Stomach Mucosa	stomach
20	chr17:16998600-17001800	Genic enhancers	Fetal Muscle Trunk	muscle
21	chr17:16998600-17002200	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr17:16998600-17002200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr17:16998600-17002600	Enhancers	Brain Substantia Nigra	brain
24	chr17:16998600-17002800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr17:16998600-17003800	Enhancers	Right Atrium	heart
26	chr17:16998600-17004000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr17:16998600-17006800	Enhancers	Psoas Muscle	Psoas
28	chr17:16998600-17015400	Genic enhancers	Fetal Muscle Leg	muscle
29	chr17:16998600-17016600	Enhancers	Skeletal Muscle Female	skeletal muscle
30	chr17:16998800-17001800	Genic enhancers	Brain Dorsolateral Prefrontal Cortex	brain
31	chr17:16998800-17001800	Strong transcription	Dnd41	blood
32	chr17:16998800-17002200	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr17:16998800-17003000	Enhancers	Brain Cingulate Gyrus	brain
34	chr17:16999000-17002000	Strong transcription	Thymus	Thymus
35	chr17:16999000-17002400	Genic enhancers	Muscle Satellite Cultured Cells	--
36	chr17:16999000-17002800	Genic enhancers	Duodenum Mucosa	Duodenum
37	chr17:16999000-17012800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
38	chr17:16999200-17001400	Strong transcription	Primary T cells fromperipheralblood	blood
39	chr17:16999200-17001400	Enhancers	Adipose Nuclei	Adipose
40	chr17:16999200-17002600	Enhancers	Cortex derived primary cultured neurospheres	brain
41	chr17:16999200-17002600	Enhancers	Brain Angular Gyrus	brain
42	chr17:16999200-17002800	Genic enhancers	Brain Hippocampus Middle	brain
43	chr17:16999200-17003000	Enhancers	Duodenum Smooth Muscle	Duodenum
44	chr17:16999200-17006400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr17:16999400-17002000	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr17:16999400-17002600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr17:16999400-17002800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr17:16999400-17002800	Enhancers	Brain Anterior Caudate	brain
49	chr17:16999400-17002800	Enhancers	NHLF	lung
50	chr17:16999400-17003000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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