The 2.0 version of rSNPBase

Variant report

Variant rs12450109
Chromosome Location chr17:16968607-16968608
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:116 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr17:16949000-16975200 Weak transcription K562 blood
2 chr17:16952600-16996400 Weak transcription Fetal Brain Male brain
3 chr17:16954800-16981200 Weak transcription H9 Cell Line embryonic stem cell
4 chr17:16955400-16970200 Weak transcription NH-A brain
5 chr17:16955400-16981200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
6 chr17:16956400-16972600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
7 chr17:16959200-16982200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
8 chr17:16959400-16972800 Weak transcription HUVEC blood vessel
9 chr17:16959600-16979800 Weak transcription HUES6 Cell Line embryonic stem cell
10 chr17:16959600-16992000 Weak transcription H1 Cell Line embryonic stem cell
11 chr17:16960800-16976400 Weak transcription Aorta Aorta
12 chr17:16961000-16970600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
13 chr17:16961600-16977200 Weak transcription Rectal Smooth Muscle rectum
14 chr17:16962000-16968800 Enhancers Brain Dorsolateral Prefrontal Cortex brain
15 chr17:16964400-16973600 Weak transcription HepG2 liver
16 chr17:16964400-16974200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
17 chr17:16964800-16969600 Enhancers Primary T helper cells PMA-I stimulated --
18 chr17:16965000-16975400 Weak transcription Placenta Amnion Placenta Amnion
19 chr17:16965200-16973000 Weak transcription GM12878-XiMat blood
20 chr17:16966200-16970400 Enhancers Primary T helper 17 cells PMA-I stimulated --
21 chr17:16966200-16980800 Weak transcription HUES48 Cell Line embryonic stem cell
22 chr17:16966400-16973400 Weak transcription Fetal Brain Female brain
23 chr17:16966400-16975000 Weak transcription Brain Germinal Matrix brain
24 chr17:16966800-16970200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
25 chr17:16966800-16975600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
26 chr17:16967000-16968800 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
27 chr17:16967000-16973200 Weak transcription Primary hematopoietic stem cells blood
28 chr17:16967200-16969000 Enhancers Skeletal Muscle Female skeletal muscle
29 chr17:16967200-16969600 Strong transcription NHEK skin
30 chr17:16967200-16970200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
31 chr17:16967200-16972800 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
32 chr17:16967200-16974200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
33 chr17:16967200-16974200 Weak transcription Dnd41 blood
34 chr17:16967400-16968800 Enhancers Skeletal Muscle Male skeletal muscle
35 chr17:16967400-16969000 Weak transcription Primary T killer memory cells from peripheral blood blood
36 chr17:16967400-16969200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
37 chr17:16967400-16969400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
38 chr17:16967400-16970200 Weak transcription Primary hematopoietic stem cells short term culture blood
39 chr17:16967400-16970200 Weak transcription Rectal Mucosa Donor 31 rectum
40 chr17:16967400-16970200 Weak transcription Hela-S3 cervix
41 chr17:16967400-16970400 Weak transcription Primary T killer naive cells fromperipheralblood blood
42 chr17:16967400-16970400 Weak transcription Duodenum Smooth Muscle Duodenum
43 chr17:16967400-16970400 Weak transcription Stomach Mucosa stomach
44 chr17:16967400-16970600 Weak transcription Stomach Smooth Muscle stomach
45 chr17:16967400-16973000 Weak transcription Primary B cells from cord blood blood
46 chr17:16967400-16974200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
47 chr17:16967400-16974200 Weak transcription Gastric stomach
48 chr17:16967400-16974200 Weak transcription Thymus Thymus
49 chr17:16967400-16974400 Weak transcription Placenta Placenta
50 chr17:16967400-16974600 Weak transcription Fetal Thymus thymus

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Last update: Aug 31, 2015