Variant report

Variant	rs16961288
Chromosome Location	chr17:16956263-16956264
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:16945045..16948831-chr17:16956136..16958119,4	MCF-7	breast:
2	chr17:16953457..16957915-chr17:16961428..16964742,4	K562	blood:
3	chr17:16956089..16958847-chr17:16968316..16970450,3	K562	blood:
4	chr17:16950816..16952722-chr17:16954932..16957698,2	MCF-7	breast:
5	chr17:16954263..16957090-chr17:16957935..16960085,2	K562	blood:
6	chr17:16953800..16956981-chr17:16958258..16961708,4	MCF-7	breast:
7	chr17:16955910..16958218-chr17:16967140..16970023,2	MCF-7	breast:
8	chr17:16948833..16952528-chr17:16954016..16957501,7	K562	blood:
9	chr17:16955891..16957915-chr17:16961428..16963448,2	K562	blood:
10	chr17:16950670..16953293-chr17:16954639..16957612,2	K562	blood:
11	chr17:16953007..16956653-chr17:16956657..16959834,3	MCF-7	breast:
12	chr17:16942782..16947288-chr17:16954210..16956855,5	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000133030	Chromatin interaction

Extended variants
information (count: 102 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:102)

rs_ID	r²[population]
rs1047805	0.90[AMR][1000 genomes]
rs10852843	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10852844	0.95[AMR][1000 genomes]
rs10852845	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10852846	0.90[AMR][1000 genomes]
rs11078364	0.93[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11078365	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11078366	1.00[CHB][hapmap];0.91[JPT][hapmap];0.99[ASN][1000 genomes]
rs11078370	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11078371	0.95[AMR][1000 genomes]
rs11078372	0.95[AMR][1000 genomes]
rs11078373	0.90[AMR][1000 genomes]
rs11078375	1.00[CHB][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1110504	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1110505	0.90[AMR][1000 genomes]
rs11651460	1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11651938	0.90[AMR][1000 genomes]
rs11651988	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11652079	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11652674	0.87[EUR][1000 genomes]
rs11652678	0.90[AMR][1000 genomes]
rs11652756	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11652936	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11654247	0.82[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11654360	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11654562	1.00[CHB][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11658084	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11658904	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12450109	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12450213	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12450238	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12450467	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12451054	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12452303	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12452802	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12601325	0.82[CEU][hapmap];1.00[CHB][hapmap];0.86[YRI][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12602124	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12602129	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12602867	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16961412	1.00[CHB][hapmap];0.85[YRI][hapmap];0.88[AMR][1000 genomes]
rs1877631	1.00[CHB][hapmap]
rs2292526	0.86[AMR][1000 genomes]
rs3744125	0.90[AMR][1000 genomes]
rs3744127	0.90[AMR][1000 genomes]
rs3744132	0.90[AMR][1000 genomes]
rs3744133	1.00[CHB][hapmap];0.85[YRI][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3744136	0.90[AMR][1000 genomes]
rs3744140	1.00[CHB][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3826305	0.88[AMR][1000 genomes]
rs4073940	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4074611	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4074612	0.93[YRI][hapmap];0.95[AMR][1000 genomes]
rs4074819	0.90[AMR][1000 genomes]
rs4264448	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4275916	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4283273	0.90[AMR][1000 genomes]
rs4321246	0.86[AMR][1000 genomes]
rs4606773	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4621033	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4985695	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4985697	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4985698	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4985703	0.90[AMR][1000 genomes]
rs4985712	0.94[ASN][1000 genomes]
rs4985714	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4985715	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4985719	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4985723	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4985727	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4985739	1.00[CHB][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4985744	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4985747	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs55751545	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56009207	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57812549	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs58326998	0.90[AMR][1000 genomes]
rs58472573	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58814183	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59394251	0.90[AMR][1000 genomes]
rs60128647	0.95[AMR][1000 genomes]
rs61018209	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6502564	0.92[YRI][hapmap]
rs7207187	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7210339	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7217970	1.00[CHB][hapmap];0.85[YRI][hapmap];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7223583	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7223686	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7223924	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73979053	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73979054	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73979055	0.96[AFR][1000 genomes]
rs73979058	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73979060	0.95[AMR][1000 genomes]
rs73979061	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73979081	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73979082	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73979083	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8064991	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8066111	0.90[AMR][1000 genomes]
rs8067563	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8075751	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs9910011	0.94[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs16961288	M-RIP	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:16947600-16960200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr17:16948400-16958600	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr17:16948600-16958800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr17:16948600-16959000	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr17:16948800-16958800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr17:16949000-16957600	Enhancers	NHDF-Ad	bronchial
7	chr17:16949000-16958400	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr17:16949000-16962000	Enhancers	Fetal Heart	heart
9	chr17:16949000-16966200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr17:16949000-16975200	Weak transcription	K562	blood
11	chr17:16950200-16962600	Weak transcription	Dnd41	blood
12	chr17:16950200-16968200	Enhancers	Psoas Muscle	Psoas
13	chr17:16951000-16957200	Enhancers	Primary T cells fromperipheralblood	blood
14	chr17:16951000-16958800	Enhancers	Right Ventricle	heart
15	chr17:16951200-16957800	Enhancers	Brain Anterior Caudate	brain
16	chr17:16952000-16958400	Weak transcription	Aorta	Aorta
17	chr17:16952600-16960000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr17:16952600-16996400	Weak transcription	Fetal Brain Male	brain
19	chr17:16952800-16957000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr17:16953600-16957200	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr17:16953600-16957200	Genic enhancers	Fetal Intestine Small	intestine
22	chr17:16953600-16960600	Enhancers	Left Ventricle	heart
23	chr17:16953600-16967600	Genic enhancers	Fetal Muscle Trunk	muscle
24	chr17:16953800-16956400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr17:16953800-16956400	Enhancers	Brain Angular Gyrus	brain
26	chr17:16953800-16956400	Enhancers	Rectal Mucosa Donor 31	rectum
27	chr17:16953800-16956600	Enhancers	Primary T helper naive cells from peripheral blood	blood
28	chr17:16953800-16956600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
29	chr17:16953800-16957000	Enhancers	Brain Substantia Nigra	brain
30	chr17:16953800-16957000	Genic enhancers	NHLF	lung
31	chr17:16953800-16957200	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
32	chr17:16953800-16957200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr17:16953800-16957200	Enhancers	Primary hematopoietic stem cells short term culture	blood
34	chr17:16953800-16957200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
35	chr17:16953800-16957200	Enhancers	Primary T helper cells PMA-I stimulated	--
36	chr17:16953800-16957200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
37	chr17:16953800-16957200	Enhancers	Primary T helper cells fromperipheralblood	blood
38	chr17:16953800-16957200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
39	chr17:16953800-16957200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr17:16953800-16957200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr17:16953800-16957200	Enhancers	Liver	Liver
42	chr17:16953800-16957200	Enhancers	Brain Cingulate Gyrus	brain
43	chr17:16953800-16957200	Enhancers	Esophagus	oesophagus
44	chr17:16953800-16957200	Enhancers	Fetal Lung	lung
45	chr17:16953800-16957200	Enhancers	Lung	lung
46	chr17:16953800-16957200	Enhancers	Sigmoid Colon	Sigmoid Colon
47	chr17:16953800-16957400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
48	chr17:16953800-16957400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr17:16953800-16957400	Enhancers	Fetal Intestine Large	intestine
50	chr17:16953800-16957800	Enhancers	Primary B cells from peripheral blood	blood

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