Variant report

Variant	rs11652674
Chromosome Location	chr17:17038945-17038946
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10852843	0.84[EUR][1000 genomes]
rs10852845	0.84[EUR][1000 genomes]
rs11078365	0.84[EUR][1000 genomes]
rs11078370	0.87[EUR][1000 genomes]
rs11078375	1.00[EUR][1000 genomes]
rs1110504	0.94[EUR][1000 genomes]
rs11651460	1.00[EUR][1000 genomes]
rs11651988	0.87[EUR][1000 genomes]
rs11652079	0.94[EUR][1000 genomes]
rs11652756	0.87[EUR][1000 genomes]
rs11652936	0.87[EUR][1000 genomes]
rs11654247	1.00[EUR][1000 genomes]
rs11654360	0.87[EUR][1000 genomes]
rs11658084	0.87[EUR][1000 genomes]
rs12450109	0.87[EUR][1000 genomes]
rs12450213	0.87[EUR][1000 genomes]
rs12450238	0.84[EUR][1000 genomes]
rs12450467	0.87[EUR][1000 genomes]
rs12451054	0.87[EUR][1000 genomes]
rs12452303	0.81[EUR][1000 genomes]
rs12452802	0.94[EUR][1000 genomes]
rs12601325	1.00[EUR][1000 genomes]
rs12602124	0.81[EUR][1000 genomes]
rs12602129	0.87[EUR][1000 genomes]
rs12602867	1.00[EUR][1000 genomes]
rs16961288	0.87[EUR][1000 genomes]
rs3744133	1.00[EUR][1000 genomes]
rs3744140	1.00[EUR][1000 genomes]
rs4073940	0.81[EUR][1000 genomes]
rs4074611	0.87[EUR][1000 genomes]
rs4264448	0.87[EUR][1000 genomes]
rs4275916	0.87[EUR][1000 genomes]
rs4606773	0.87[EUR][1000 genomes]
rs4621033	0.87[EUR][1000 genomes]
rs4985695	0.87[EUR][1000 genomes]
rs4985697	0.87[EUR][1000 genomes]
rs4985698	0.87[EUR][1000 genomes]
rs4985714	0.87[EUR][1000 genomes]
rs4985715	0.81[EUR][1000 genomes]
rs4985719	0.81[EUR][1000 genomes]
rs4985727	0.87[EUR][1000 genomes]
rs4985739	0.94[EUR][1000 genomes]
rs4985744	0.94[EUR][1000 genomes]
rs4985747	0.94[EUR][1000 genomes]
rs55751545	1.00[EUR][1000 genomes]
rs55955502	1.00[AFR][1000 genomes]
rs56009207	0.87[EUR][1000 genomes]
rs57812549	0.97[EUR][1000 genomes]
rs58814183	0.87[EUR][1000 genomes]
rs61018209	0.94[EUR][1000 genomes]
rs61740515	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs7207187	0.87[EUR][1000 genomes]
rs7210339	0.87[EUR][1000 genomes]
rs7217970	0.94[EUR][1000 genomes]
rs7223583	0.87[EUR][1000 genomes]
rs7223924	0.81[EUR][1000 genomes]
rs73979053	0.84[EUR][1000 genomes]
rs73979054	0.87[EUR][1000 genomes]
rs73979058	0.87[EUR][1000 genomes]
rs73979061	0.87[EUR][1000 genomes]
rs73979081	0.87[EUR][1000 genomes]
rs73979082	0.84[EUR][1000 genomes]
rs73979083	0.87[EUR][1000 genomes]
rs8064991	1.00[EUR][1000 genomes]
rs8067563	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907728	chr17:17013189-17095487	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv984510	chr17:17015688-17048858	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv524958	chr17:17029718-17060805	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:17024200-17043200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr17:17024400-17039800	Weak transcription	Small Intestine	intestine
3	chr17:17024600-17045600	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr17:17027400-17042400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr17:17027400-17043000	Strong transcription	NHEK	skin
6	chr17:17027400-17043400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr17:17029800-17043400	Strong transcription	NHLF	lung
8	chr17:17029800-17044200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr17:17029800-17088400	Strong transcription	Dnd41	blood
10	chr17:17030000-17041800	Genic enhancers	Brain Dorsolateral Prefrontal Cortex	brain
11	chr17:17030000-17042800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr17:17030000-17042800	Strong transcription	A549	lung
13	chr17:17030000-17043200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr17:17030000-17043200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr17:17030000-17043600	Strong transcription	Esophagus	oesophagus
16	chr17:17030000-17048200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
17	chr17:17030000-17052200	Strong transcription	Primary B cells from peripheral blood	blood
18	chr17:17030000-17088000	Strong transcription	Duodenum Mucosa	Duodenum
19	chr17:17030200-17042800	Strong transcription	Muscle Satellite Cultured Cells	--
20	chr17:17030200-17043800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr17:17030200-17051600	Strong transcription	Monocytes-CD14+_RO01746	blood
22	chr17:17030200-17055000	Strong transcription	Rectal Mucosa Donor 31	rectum
23	chr17:17030400-17043800	Strong transcription	Adipose Nuclei	Adipose
24	chr17:17030400-17044800	Strong transcription	Primary B cells from cord blood	blood
25	chr17:17030400-17047600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr17:17030400-17047800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr17:17030400-17055800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr17:17030400-17059800	Strong transcription	Fetal Intestine Small	intestine
29	chr17:17030400-17079200	Strong transcription	Sigmoid Colon	Sigmoid Colon
30	chr17:17030400-17089200	Strong transcription	Fetal Intestine Large	intestine
31	chr17:17030600-17040600	Genic enhancers	Brain Anterior Caudate	brain
32	chr17:17030600-17042800	Strong transcription	Osteobl	bone
33	chr17:17030600-17045000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr17:17030600-17051000	Strong transcription	Colonic Mucosa	Colon
35	chr17:17030800-17042800	Strong transcription	Thymus	Thymus
36	chr17:17030800-17043400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr17:17031000-17040000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr17:17031000-17043600	Strong transcription	HSMM	muscle
39	chr17:17031000-17078800	Strong transcription	Rectal Mucosa Donor 29	rectum
40	chr17:17031200-17057200	Strong transcription	Primary T cells from cord blood	blood
41	chr17:17031200-17067800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr17:17031400-17042400	Strong transcription	Ovary	ovary
43	chr17:17031400-17051800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr17:17032000-17055000	Strong transcription	Primary T helper cells fromperipheralblood	blood
45	chr17:17032000-17073800	Strong transcription	Fetal Lung	lung
46	chr17:17032200-17044000	Strong transcription	Stomach Smooth Muscle	stomach
47	chr17:17032200-17048200	Weak transcription	Right Atrium	heart
48	chr17:17032200-17051800	Strong transcription	Pancreas	Pancrea
49	chr17:17032200-17073600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr17:17032400-17051600	Strong transcription	Gastric	stomach

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