Variant report

Variant	rs4985715
Chromosome Location	chr17:16961899-16961900
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:16961533..16963190-chr17:16969814..16972277,2	MCF-7	breast:
2	chr17:16945357..16947606-chr17:16959220..16962216,2	K562	blood:
3	chr17:16960541..16963488-chr17:16973669..16975731,3	MCF-7	breast:
4	chr17:16953457..16957915-chr17:16961428..16964742,4	K562	blood:
5	chr17:16961416..16963930-chr17:16973048..16975828,2	MCF-7	breast:
6	chr17:16959720..16962081-chr17:16964608..16966842,2	K562	blood:
7	chr17:16944990..16949876-chr17:16959315..16962454,4	MCF-7	breast:
8	chr17:16955891..16957915-chr17:16961428..16963448,2	K562	blood:
9	chr17:16958465..16960222-chr17:16960878..16963338,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000133030	Chromatin interaction

Extended variants
information (count: 86 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs10852843	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10852845	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11078364	0.88[ASN][1000 genomes]
rs11078365	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11078366	1.00[CHB][hapmap];0.91[JPT][hapmap];0.97[ASN][1000 genomes]
rs11078370	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11078375	1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs11651460	0.82[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs11651988	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11652674	0.81[EUR][1000 genomes]
rs11652756	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11652936	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11654247	0.85[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs11654360	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11654562	0.90[CHB][hapmap];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11654887	0.86[AMR][1000 genomes]
rs11657189	0.86[AMR][1000 genomes]
rs11658084	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11658904	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12450109	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12450213	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12450238	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12450467	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12451054	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12451343	0.96[AMR][1000 genomes]
rs12452303	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12601325	0.85[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs12602124	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12602129	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12602583	0.80[AMR][1000 genomes]
rs12602592	0.86[AMR][1000 genomes]
rs12602839	0.94[AMR][1000 genomes]
rs12602867	0.81[EUR][1000 genomes]
rs1567815	0.86[AMR][1000 genomes]
rs16961288	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16961412	1.00[CHB][hapmap]
rs1877631	1.00[CHB][hapmap]
rs3744133	0.82[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs3744140	1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs4073940	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4074611	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4264448	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4275916	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4606773	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4621033	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4629023	0.92[YRI][hapmap];0.96[AMR][1000 genomes]
rs4985695	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4985697	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4985698	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4985704	0.86[AMR][1000 genomes]
rs4985712	0.92[ASN][1000 genomes]
rs4985714	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4985716	0.96[AMR][1000 genomes]
rs4985719	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4985723	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4985727	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4985737	0.86[AMR][1000 genomes]
rs4985739	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs4985742	0.86[AMR][1000 genomes]
rs4985743	0.86[AMR][1000 genomes]
rs55751545	0.81[EUR][1000 genomes]
rs56009207	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58472573	0.93[ASN][1000 genomes]
rs58814183	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7207187	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7210339	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7212275	0.96[AMR][1000 genomes]
rs7216677	0.86[AMR][1000 genomes]
rs7217970	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs7223583	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7223686	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.97[ASN][1000 genomes]
rs7223924	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73979053	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73979054	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73979058	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73979061	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73979081	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73979082	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73979083	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8064991	0.81[EUR][1000 genomes]
rs8067563	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8069259	0.86[AMR][1000 genomes]
rs8071254	0.96[AMR][1000 genomes]
rs8075751	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs8077360	0.86[AMR][1000 genomes]
rs9910011	0.92[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4985715	M-RIP	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:16949000-16962000	Enhancers	Fetal Heart	heart
2	chr17:16949000-16966200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr17:16949000-16975200	Weak transcription	K562	blood
4	chr17:16950200-16962600	Weak transcription	Dnd41	blood
5	chr17:16950200-16968200	Enhancers	Psoas Muscle	Psoas
6	chr17:16952600-16996400	Weak transcription	Fetal Brain Male	brain
7	chr17:16953600-16967600	Genic enhancers	Fetal Muscle Trunk	muscle
8	chr17:16954200-16962200	Genic enhancers	Fetal Stomach	stomach
9	chr17:16954800-16981200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr17:16955400-16970200	Weak transcription	NH-A	brain
11	chr17:16955400-16981200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr17:16956400-16972600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr17:16956600-16965600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr17:16956600-16966200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr17:16956800-16966000	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr17:16957000-16962400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr17:16957200-16962800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr17:16957200-16964800	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr17:16957200-16965800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr17:16957400-16963200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr17:16957400-16965000	Weak transcription	Primary B cells from cord blood	blood
22	chr17:16957600-16962200	Enhancers	Colon Smooth Muscle	Colon
23	chr17:16957600-16964000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
24	chr17:16957800-16963800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr17:16958800-16965200	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr17:16959200-16964600	Genic enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr17:16959200-16965400	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr17:16959200-16966800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr17:16959200-16982200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr17:16959400-16972800	Weak transcription	HUVEC	blood vessel
31	chr17:16959600-16963800	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr17:16959600-16966800	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr17:16959600-16966800	Enhancers	Skeletal Muscle Female	skeletal muscle
34	chr17:16959600-16979800	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr17:16959600-16992000	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr17:16959800-16963200	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr17:16959800-16964400	Strong transcription	Fetal Intestine Small	intestine
38	chr17:16959800-16966400	Weak transcription	Small Intestine	intestine
39	chr17:16960000-16962800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr17:16960000-16963000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr17:16960000-16963000	Strong transcription	Primary T helper cells fromperipheralblood	blood
42	chr17:16960200-16962600	Strong transcription	Brain Germinal Matrix	brain
43	chr17:16960200-16963200	Weak transcription	Brain Cingulate Gyrus	brain
44	chr17:16960200-16963800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr17:16960200-16964400	Strong transcription	Fetal Intestine Large	intestine
46	chr17:16960200-16965000	Strong transcription	Primary T cells fromperipheralblood	blood
47	chr17:16960200-16966000	Strong transcription	Thymus	Thymus
48	chr17:16960200-16967600	Genic enhancers	Fetal Muscle Leg	muscle
49	chr17:16960400-16962000	Weak transcription	Ovary	ovary
50	chr17:16960400-16962600	Weak transcription	Brain Hippocampus Middle	brain

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