Variant report

Variant	rs73249964
Chromosome Location	chr10:39133881-39133882
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs67240579	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73241279	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73243204	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73244940	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73246557	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73246565	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73249992	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:65 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2759744	chr10:38677023-39154935	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv550423	chr10:38751950-39154633	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv550434	chr10:38778034-39154633	ZNF genes & repeats Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	esv2758214	chr10:38868836-39154935	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv550477	chr10:38869176-39154633	Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	esv3442702	chr10:38871309-39150949	ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv948283	chr10:39067282-39154935	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv550543	chr10:39072549-39148308	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv550544	chr10:39075153-39140425	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv550545	chr10:39075153-39148898	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv550546	chr10:39075153-39154220	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv550547	chr10:39075153-39154633	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	esv3328471	chr10:39075346-39154935	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	esv3343007	chr10:39075346-39154935	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	esv3351317	chr10:39075346-39154935	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
16	esv3395582	chr10:39075346-39154935	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
17	esv3432777	chr10:39075346-39154935	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
18	esv3435778	chr10:39075346-39154935	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
19	esv18050	chr10:39076665-39154687	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
20	nsv821087	chr10:39076665-39154687	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
21	nsv550551	chr10:39088829-39148308	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	lncRNA	n/a	inside rSNPs	diseases
22	nsv550552	chr10:39088829-39154220	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
23	nsv550553	chr10:39088829-39154633	ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
24	nsv550555	chr10:39097912-39136170	ZNF genes & repeats Weak transcription Active TSS	lncRNA	n/a	inside rSNPs	diseases
25	nsv550556	chr10:39097912-39140425	ZNF genes & repeats Weak transcription Active TSS	lncRNA	n/a	inside rSNPs	diseases
26	nsv550557	chr10:39097912-39148898	ZNF genes & repeats Weak transcription Active TSS	lncRNA	n/a	inside rSNPs	diseases
27	nsv550558	chr10:39097912-39154633	ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
28	esv4872	chr10:39099443-39154855	ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
29	nsv550559	chr10:39105895-39140425	ZNF genes & repeats Weak transcription Active TSS	lncRNA	n/a	inside rSNPs	diseases
30	nsv550560	chr10:39105895-39154633	ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
31	nsv550561	chr10:39107024-39154633	ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
32	nsv550563	chr10:39109086-39136170	ZNF genes & repeats Weak transcription Active TSS	lncRNA	n/a	inside rSNPs	diseases
33	nsv550564	chr10:39109086-39140425	ZNF genes & repeats Weak transcription Active TSS	lncRNA	n/a	inside rSNPs	diseases
34	nsv550565	chr10:39109086-39145357	ZNF genes & repeats Weak transcription Active TSS	lncRNA	n/a	inside rSNPs	diseases
35	nsv550566	chr10:39109086-39148308	ZNF genes & repeats Weak transcription Active TSS	lncRNA	n/a	inside rSNPs	diseases
36	nsv550567	chr10:39109086-39151351	ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
37	nsv550568	chr10:39109086-39154220	ZNF genes & repeats Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
38	nsv550569	chr10:39109086-39154633	ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
39	nsv550571	chr10:39112514-39136170	ZNF genes & repeats Weak transcription	lncRNA	n/a	inside rSNPs	diseases
40	nsv550572	chr10:39112514-39140425	ZNF genes & repeats Weak transcription	lncRNA	n/a	inside rSNPs	diseases
41	nsv550573	chr10:39112514-39145357	ZNF genes & repeats Weak transcription	lncRNA	n/a	inside rSNPs	diseases
42	nsv550574	chr10:39112514-39148898	ZNF genes & repeats Weak transcription Active TSS	lncRNA	n/a	inside rSNPs	diseases
43	nsv550575	chr10:39112514-39151351	ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
44	nsv550576	chr10:39112514-39154633	ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
45	esv6260	chr10:39113876-39153964	ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
46	nsv550577	chr10:39115879-39154633	ZNF genes & repeats Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
47	esv8616	chr10:39116552-39150912	ZNF genes & repeats Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
48	nsv550578	chr10:39118686-39148898	ZNF genes & repeats Weak transcription Active TSS	lncRNA	n/a	inside rSNPs	diseases
49	esv3369982	chr10:39120257-39137566	ZNF genes & repeats Weak transcription	lncRNA	n/a	inside rSNPs	diseases
50	esv3703	chr10:39120418-39140106	ZNF genes & repeats Weak transcription	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:39076400-39155000	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
2	chr10:39076600-39154600	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
3	chr10:39076600-39154800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
4	chr10:39076600-39154800	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
5	chr10:39076600-39154800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
6	chr10:39076600-39154800	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
7	chr10:39076600-39154800	ZNF genes & repeats	Adipose Nuclei	Adipose
8	chr10:39076600-39155000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
9	chr10:39076600-39155000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr10:39076600-39155000	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr10:39076600-39155000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
12	chr10:39076600-39155000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
13	chr10:39076600-39155000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
14	chr10:39076600-39155000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
15	chr10:39076600-39155000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
16	chr10:39076600-39155000	ZNF genes & repeats	Primary T cells from cord blood	blood
17	chr10:39076600-39155000	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
18	chr10:39076600-39155000	ZNF genes & repeats	Liver	Liver
19	chr10:39076600-39155000	ZNF genes & repeats	Brain Hippocampus Middle	brain
20	chr10:39076600-39155000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
21	chr10:39076600-39155000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
22	chr10:39076600-39155000	ZNF genes & repeats	Fetal Brain Male	brain
23	chr10:39076600-39155000	ZNF genes & repeats	Fetal Lung	lung
24	chr10:39076600-39155000	ZNF genes & repeats	Dnd41	blood
25	chr10:39076600-39155000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
26	chr10:39076800-39152800	ZNF genes & repeats	Primary B cells from cord blood	blood
27	chr10:39076800-39154800	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
28	chr10:39077200-39155000	ZNF genes & repeats	Gastric	stomach
29	chr10:39093800-39155000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
30	chr10:39096000-39142000	ZNF genes & repeats	Rectal Smooth Muscle	rectum
31	chr10:39102800-39134400	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
32	chr10:39102800-39154800	ZNF genes & repeats	Brain Anterior Caudate	brain
33	chr10:39102800-39155000	ZNF genes & repeats	Fetal Heart	heart
34	chr10:39103000-39155000	ZNF genes & repeats	Brain Substantia Nigra	brain
35	chr10:39104600-39154800	ZNF genes & repeats	Colonic Mucosa	Colon
36	chr10:39113800-39135400	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
37	chr10:39114000-39134400	ZNF genes & repeats	Brain Angular Gyrus	brain
38	chr10:39114000-39153600	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
39	chr10:39118600-39154600	ZNF genes & repeats	Fetal Kidney	kidney
40	chr10:39119000-39154800	ZNF genes & repeats	HepG2	liver
41	chr10:39122400-39134400	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
42	chr10:39122400-39134600	ZNF genes & repeats	Colon Smooth Muscle	Colon
43	chr10:39122400-39147200	ZNF genes & repeats	K562	blood
44	chr10:39122400-39147600	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
45	chr10:39122400-39154800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr10:39122400-39155000	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
47	chr10:39123200-39134400	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
48	chr10:39123200-39147400	ZNF genes & repeats	GM12878-XiMat	blood
49	chr10:39125400-39134000	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
50	chr10:39126800-39134400	ZNF genes & repeats	Brain Cingulate Gyrus	brain

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