Variant report

Variant	rs73604793
Chromosome Location	chr6:149895627-149895628
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:149894790..149896542-chr6:149899251..149901675,2	MCF-7	breast:
2	chr6:149891208..149893657-chr6:149895045..149897012,2	K562	blood:
3	chr6:149886533..149890851-chr6:149891817..149897125,7	K562	blood:
4	chr6:149894224..149896092-chr6:149966724..149969015,2	K562	blood:

Variant related genes	Relation type
ENSG00000055211	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs17085985	1.00[EUR][1000 genomes]
rs17086054	1.00[EUR][1000 genomes]
rs34024129	1.00[EUR][1000 genomes]
rs35391071	1.00[EUR][1000 genomes]
rs35507156	1.00[EUR][1000 genomes]
rs56390023	1.00[EUR][1000 genomes]
rs56836556	1.00[EUR][1000 genomes]
rs57234155	1.00[EUR][1000 genomes]
rs57240808	1.00[EUR][1000 genomes]
rs58467138	1.00[EUR][1000 genomes]
rs59582367	1.00[EUR][1000 genomes]
rs6926168	1.00[EUR][1000 genomes]
rs6926360	1.00[EUR][1000 genomes]
rs6934491	1.00[EUR][1000 genomes]
rs73779314	1.00[EUR][1000 genomes]
rs73779330	1.00[EUR][1000 genomes]
rs73779333	1.00[EUR][1000 genomes]
rs73779345	1.00[EUR][1000 genomes]
rs73779346	1.00[EUR][1000 genomes]
rs73779354	1.00[EUR][1000 genomes]
rs73779366	1.00[EUR][1000 genomes]
rs73779373	1.00[EUR][1000 genomes]
rs73779376	1.00[EUR][1000 genomes]
rs7740647	1.00[EUR][1000 genomes]
rs7760102	1.00[EUR][1000 genomes]
rs7761612	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv289	chr6:149864898-149998818	Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv5534	chr6:149864898-149998818	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv886762	chr6:149866452-150174507	Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149888400-149897400	Weak transcription	Lung	lung
2	chr6:149888400-149901600	Weak transcription	Aorta	Aorta
3	chr6:149888400-149902000	Weak transcription	Gastric	stomach
4	chr6:149888400-149911600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr6:149888600-149897200	Weak transcription	Fetal Muscle Trunk	muscle
6	chr6:149888600-149897400	Weak transcription	Right Ventricle	heart
7	chr6:149888600-149898000	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr6:149888600-149898400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:149888600-149901400	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr6:149888600-149901400	Weak transcription	Colonic Mucosa	Colon
11	chr6:149888600-149901600	Weak transcription	NH-A	brain
12	chr6:149888600-149905200	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr6:149888600-149907600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr6:149888600-149909800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr6:149888600-149912800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr6:149888600-149922000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr6:149888800-149896000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr6:149888800-149896800	Weak transcription	Primary hematopoietic stem cells	blood
19	chr6:149888800-149897200	Weak transcription	Rectal Smooth Muscle	rectum
20	chr6:149888800-149898000	Weak transcription	Fetal Kidney	kidney
21	chr6:149888800-149898200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr6:149888800-149898200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr6:149888800-149898200	Weak transcription	Esophagus	oesophagus
24	chr6:149888800-149901400	Weak transcription	Fetal Brain Female	brain
25	chr6:149888800-149901600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr6:149888800-149901600	Weak transcription	NHLF	lung
27	chr6:149888800-149901800	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr6:149888800-149904800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr6:149888800-149914800	Weak transcription	A549	lung
30	chr6:149889000-149896200	Weak transcription	Brain Hippocampus Middle	brain
31	chr6:149889000-149896400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr6:149889000-149896400	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr6:149889000-149896600	Weak transcription	Stomach Smooth Muscle	stomach
34	chr6:149889000-149897600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr6:149889000-149898200	Weak transcription	Primary monocytes fromperipheralblood	blood
36	chr6:149889000-149898400	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr6:149889000-149901400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
38	chr6:149889000-149901600	Weak transcription	NHDF-Ad	bronchial
39	chr6:149889000-149902000	Weak transcription	Osteobl	bone
40	chr6:149889000-149905400	Weak transcription	HSMMtube	muscle
41	chr6:149889000-149908400	Weak transcription	Pancreas	Pancrea
42	chr6:149889000-149928000	Weak transcription	Stomach Mucosa	stomach
43	chr6:149889200-149895800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr6:149889200-149896200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr6:149889200-149896200	Weak transcription	Brain Cingulate Gyrus	brain
46	chr6:149889200-149897600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr6:149889200-149898000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr6:149889200-149898400	Weak transcription	Fetal Lung	lung
49	chr6:149889200-149919600	Weak transcription	Pancreatic Islets	Pancreatic Islet
50	chr6:149889400-149896800	Weak transcription	Spleen	Spleen

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