Variant report

Variant	rs73779330
Chromosome Location	chr6:149702650-149702651
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149635359..149638022-chr6:149700186..149702826,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs17085985	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17086054	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34024129	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35391071	1.00[EUR][1000 genomes]
rs35507156	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55763048	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56126528	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56390023	1.00[EUR][1000 genomes]
rs56836556	1.00[EUR][1000 genomes]
rs57234155	1.00[EUR][1000 genomes]
rs57240808	1.00[EUR][1000 genomes]
rs58467138	1.00[EUR][1000 genomes]
rs59090184	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs59181586	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59582367	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60598581	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60923183	1.00[EUR][1000 genomes]
rs6926168	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6926360	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6934491	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73604793	1.00[EUR][1000 genomes]
rs73779304	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73779305	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73779307	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73779311	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73779312	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73779313	1.00[EUR][1000 genomes]
rs73779314	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73779333	1.00[EUR][1000 genomes]
rs73779345	1.00[EUR][1000 genomes]
rs73779346	1.00[EUR][1000 genomes]
rs73779354	1.00[EUR][1000 genomes]
rs73779366	1.00[EUR][1000 genomes]
rs73779373	1.00[EUR][1000 genomes]
rs73779376	1.00[EUR][1000 genomes]
rs7740647	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7760102	1.00[EUR][1000 genomes]
rs7761612	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs935386	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024106	chr6:149622349-149745053	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv522875	chr6:149643709-149762537	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv530444	chr6:149654540-149848997	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149682600-149709200	Weak transcription	Psoas Muscle	Psoas
2	chr6:149686000-149709000	Weak transcription	Stomach Mucosa	stomach
3	chr6:149687800-149726400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:149692600-149702800	Strong transcription	Fetal Thymus	thymus
5	chr6:149695400-149709600	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr6:149697200-149705400	Strong transcription	Primary T cells fromperipheralblood	blood
7	chr6:149697400-149706400	Strong transcription	Dnd41	blood
8	chr6:149697400-149708200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr6:149697600-149709000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr6:149697600-149713600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr6:149698400-149709600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr6:149698600-149703600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr6:149698800-149703000	Strong transcription	HUES48 Cell Line	embryonic stem cell
14	chr6:149698800-149703200	Strong transcription	HSMM	muscle
15	chr6:149698800-149703400	Strong transcription	HUES6 Cell Line	embryonic stem cell
16	chr6:149698800-149703400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr6:149698800-149703800	Strong transcription	Primary neutrophils fromperipheralblood	blood
18	chr6:149698800-149705200	Strong transcription	Primary monocytes fromperipheralblood	blood
19	chr6:149698800-149705200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr6:149698800-149705800	Strong transcription	Primary T helper naive cells from peripheral blood	blood
21	chr6:149698800-149707600	Strong transcription	Cortex derived primary cultured neurospheres	brain
22	chr6:149699000-149703200	Genic enhancers	Primary T helper cells PMA-I stimulated	--
23	chr6:149699000-149703200	Strong transcription	Rectal Mucosa Donor 29	rectum
24	chr6:149699000-149703400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
25	chr6:149699000-149703400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr6:149699000-149703400	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr6:149699000-149703400	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr6:149699000-149703400	Strong transcription	Adipose Nuclei	Adipose
29	chr6:149699000-149704000	Strong transcription	HepG2	liver
30	chr6:149699000-149704800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
31	chr6:149699000-149704800	Strong transcription	Osteobl	bone
32	chr6:149699000-149705400	Strong transcription	Primary T cells from cord blood	blood
33	chr6:149699000-149706800	Strong transcription	Primary T helper cells fromperipheralblood	blood
34	chr6:149699000-149707000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr6:149699000-149707200	Strong transcription	HUES64 Cell Line	embryonic stem cell
36	chr6:149699000-149707800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr6:149699200-149703200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr6:149699200-149703200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr6:149699200-149703200	Strong transcription	Liver	Liver
40	chr6:149699200-149703200	Strong transcription	Gastric	stomach
41	chr6:149699200-149703200	Strong transcription	Left Ventricle	heart
42	chr6:149699200-149703200	Strong transcription	Ovary	ovary
43	chr6:149699200-149703200	Strong transcription	Thymus	Thymus
44	chr6:149699200-149703200	Strong transcription	Spleen	Spleen
45	chr6:149699200-149703400	Strong transcription	Primary hematopoietic stem cells	blood
46	chr6:149699200-149703400	Strong transcription	HSMMtube	muscle
47	chr6:149699200-149703600	Strong transcription	Primary B cells from cord blood	blood
48	chr6:149699200-149703600	Strong transcription	Primary B cells from peripheral blood	blood
49	chr6:149699200-149703600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr6:149699200-149703600	Strong transcription	Sigmoid Colon	Sigmoid Colon

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