Variant report

Variant	rs73779312
Chromosome Location	chr6:149670794-149670795
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149669144..149671922-chr6:149672663..149676405,4	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs17085985	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17086054	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34024129	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35391071	1.00[EUR][1000 genomes]
rs35507156	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55763048	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56126528	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56390023	1.00[EUR][1000 genomes]
rs56836556	1.00[EUR][1000 genomes]
rs57234155	1.00[EUR][1000 genomes]
rs57240808	1.00[EUR][1000 genomes]
rs58467138	1.00[EUR][1000 genomes]
rs59090184	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs59181586	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59582367	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60598581	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60923183	1.00[EUR][1000 genomes]
rs6926168	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6926360	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6934491	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73779304	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73779305	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73779307	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73779311	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73779313	1.00[EUR][1000 genomes]
rs73779314	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73779330	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73779333	1.00[EUR][1000 genomes]
rs73779345	1.00[EUR][1000 genomes]
rs73779346	1.00[EUR][1000 genomes]
rs73779354	1.00[EUR][1000 genomes]
rs73779366	1.00[EUR][1000 genomes]
rs73779373	1.00[EUR][1000 genomes]
rs73779376	1.00[EUR][1000 genomes]
rs7740647	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7760102	1.00[EUR][1000 genomes]
rs7761612	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs935386	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024106	chr6:149622349-149745053	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv522875	chr6:149643709-149762537	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv530444	chr6:149654540-149848997	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149641200-149681400	Weak transcription	Fetal Stomach	stomach
2	chr6:149649400-149689400	Weak transcription	Fetal Brain Female	brain
3	chr6:149654000-149674200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:149656200-149670800	Weak transcription	Esophagus	oesophagus
5	chr6:149656800-149681400	Weak transcription	Psoas Muscle	Psoas
6	chr6:149656800-149682400	Weak transcription	Lung	lung
7	chr6:149656800-149694400	Weak transcription	Placenta	Placenta
8	chr6:149657800-149673800	Weak transcription	Thymus	Thymus
9	chr6:149657800-149683800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr6:149657800-149691200	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr6:149658000-149673800	Weak transcription	Fetal Intestine Large	intestine
12	chr6:149658000-149673800	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr6:149658000-149674000	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr6:149658000-149679000	Weak transcription	K562	blood
15	chr6:149658000-149680800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:149658000-149681400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr6:149658000-149695400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr6:149658200-149691000	Weak transcription	NHDF-Ad	bronchial
19	chr6:149658800-149674000	Weak transcription	HepG2	liver
20	chr6:149658800-149692400	Weak transcription	Fetal Kidney	kidney
21	chr6:149659200-149685200	Weak transcription	Ovary	ovary
22	chr6:149659200-149691400	Weak transcription	Fetal Muscle Trunk	muscle
23	chr6:149659400-149679000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr6:149659600-149679200	Weak transcription	NH-A	brain
25	chr6:149659600-149684200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr6:149660400-149682200	Weak transcription	Fetal Muscle Leg	muscle
27	chr6:149660400-149682400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr6:149660400-149685600	Weak transcription	Pancreas	Pancrea
29	chr6:149660400-149699200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr6:149661000-149674200	Weak transcription	Left Ventricle	heart
31	chr6:149662200-149694800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr6:149663000-149674000	Weak transcription	Osteobl	bone
33	chr6:149663400-149685400	Weak transcription	Fetal Lung	lung
34	chr6:149663600-149673800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr6:149663600-149674200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr6:149663800-149685400	Weak transcription	Brain Anterior Caudate	brain
37	chr6:149664000-149673600	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr6:149664000-149673800	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr6:149664000-149673800	Weak transcription	Adipose Nuclei	Adipose
40	chr6:149664000-149675200	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr6:149664000-149682600	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr6:149664000-149687400	Weak transcription	HSMM	muscle
43	chr6:149664000-149694400	Weak transcription	Duodenum Mucosa	Duodenum
44	chr6:149664600-149674000	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr6:149664600-149681400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
46	chr6:149664600-149687400	Weak transcription	Right Ventricle	heart
47	chr6:149665200-149670800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
48	chr6:149665600-149680400	Weak transcription	Brain Germinal Matrix	brain
49	chr6:149665800-149680400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr6:149666000-149673800	Weak transcription	Small Intestine	intestine

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