Variant report

Variant	rs73779305
Chromosome Location	chr6:149643425-149643426
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:149642865..149645034-chr6:149649169..149650874,2	MCF-7	breast:
2	chr6:149380086..149382702-chr6:149642964..149645035,2	MCF-7	breast:
3	chr6:149643394..149646422-chr6:149647403..149650011,4	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs17085985	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17086054	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34024129	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35391071	1.00[EUR][1000 genomes]
rs35507156	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55763048	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56126528	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56390023	1.00[EUR][1000 genomes]
rs56836556	1.00[EUR][1000 genomes]
rs57234155	1.00[EUR][1000 genomes]
rs57240808	1.00[EUR][1000 genomes]
rs58467138	1.00[EUR][1000 genomes]
rs59090184	0.87[AMR][1000 genomes]
rs59181586	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59582367	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60598581	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60923183	1.00[EUR][1000 genomes]
rs6926168	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6926360	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6934491	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73779304	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73779307	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73779311	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73779312	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73779313	1.00[EUR][1000 genomes]
rs73779314	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73779330	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73779333	1.00[EUR][1000 genomes]
rs73779345	1.00[EUR][1000 genomes]
rs73779346	1.00[EUR][1000 genomes]
rs73779354	1.00[EUR][1000 genomes]
rs73779366	1.00[EUR][1000 genomes]
rs73779373	1.00[EUR][1000 genomes]
rs73779376	1.00[EUR][1000 genomes]
rs7740647	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7760102	1.00[EUR][1000 genomes]
rs7761612	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs935386	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024776	chr6:149398652-149654593	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1015360	chr6:149609804-149649982	Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1024106	chr6:149622349-149745053	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149640000-149649400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:149640200-149645600	Weak transcription	Left Ventricle	heart
3	chr6:149640200-149655400	Weak transcription	Esophagus	oesophagus
4	chr6:149640200-149655600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:149640400-149645600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:149640400-149648600	Weak transcription	Right Ventricle	heart
7	chr6:149640600-149645800	Weak transcription	Fetal Muscle Leg	muscle
8	chr6:149640600-149648600	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr6:149640800-149645400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr6:149640800-149645600	Weak transcription	Fetal Intestine Small	intestine
11	chr6:149640800-149649000	Weak transcription	Thymus	Thymus
12	chr6:149640800-149652800	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr6:149640800-149653200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr6:149641000-149648400	Weak transcription	Fetal Intestine Large	intestine
15	chr6:149641200-149644000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr6:149641200-149644200	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr6:149641200-149647400	Enhancers	Primary T killer memory cells from peripheral blood	blood
18	chr6:149641200-149648400	Weak transcription	Fetal Kidney	kidney
19	chr6:149641200-149649200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr6:149641200-149657400	Weak transcription	Aorta	Aorta
21	chr6:149641200-149681400	Weak transcription	Fetal Stomach	stomach
22	chr6:149641400-149645600	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr6:149641400-149655600	Weak transcription	Placenta	Placenta
24	chr6:149641600-149643800	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr6:149641600-149644000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr6:149641600-149644600	Enhancers	Brain Hippocampus Middle	brain
27	chr6:149641600-149644800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr6:149641600-149645200	Weak transcription	Stomach Smooth Muscle	stomach
29	chr6:149641600-149645600	Weak transcription	Brain Cingulate Gyrus	brain
30	chr6:149641600-149645600	Weak transcription	Stomach Mucosa	stomach
31	chr6:149641600-149646800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr6:149641600-149646800	Weak transcription	Pancreas	Pancrea
33	chr6:149641600-149647200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
34	chr6:149641600-149648400	Weak transcription	Duodenum Mucosa	Duodenum
35	chr6:149641600-149649400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr6:149641600-149652600	Weak transcription	Brain Germinal Matrix	brain
37	chr6:149641600-149656000	Weak transcription	Lung	lung
38	chr6:149641600-149660200	Enhancers	Primary T helper naive cells from peripheral blood	blood
39	chr6:149641800-149644200	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
40	chr6:149641800-149645200	Weak transcription	Adipose Nuclei	Adipose
41	chr6:149641800-149645400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
42	chr6:149641800-149646600	Enhancers	A549	lung
43	chr6:149641800-149647200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr6:149641800-149660200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
45	chr6:149642000-149643600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
46	chr6:149642000-149648800	Enhancers	Primary T cells from cord blood	blood
47	chr6:149642200-149644000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr6:149642200-149644600	Weak transcription	Rectal Smooth Muscle	rectum
49	chr6:149642200-149645200	Weak transcription	Rectal Mucosa Donor 29	rectum
50	chr6:149642200-149645200	Weak transcription	HMEC	breast

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