Variant report

Variant	rs34024129
Chromosome Location	chr6:149732976-149732977
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs17085985	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17086054	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35391071	1.00[EUR][1000 genomes]
rs35507156	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55763048	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56126528	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56390023	1.00[EUR][1000 genomes]
rs56836556	1.00[EUR][1000 genomes]
rs57234155	1.00[EUR][1000 genomes]
rs57240808	1.00[EUR][1000 genomes]
rs58467138	1.00[EUR][1000 genomes]
rs59090184	0.87[AMR][1000 genomes]
rs59181586	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59582367	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60598581	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60923183	1.00[EUR][1000 genomes]
rs6926168	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6926360	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6934491	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73604793	1.00[EUR][1000 genomes]
rs73779304	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73779305	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73779307	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73779311	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73779312	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73779313	1.00[EUR][1000 genomes]
rs73779314	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73779330	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73779333	1.00[EUR][1000 genomes]
rs73779345	1.00[EUR][1000 genomes]
rs73779346	1.00[EUR][1000 genomes]
rs73779354	1.00[EUR][1000 genomes]
rs73779366	1.00[EUR][1000 genomes]
rs73779373	1.00[EUR][1000 genomes]
rs73779376	1.00[EUR][1000 genomes]
rs7740647	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7760102	1.00[EUR][1000 genomes]
rs7761612	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs935386	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024106	chr6:149622349-149745053	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv522875	chr6:149643709-149762537	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv530444	chr6:149654540-149848997	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149701400-149734200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:149701600-149733600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr6:149705200-149734600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr6:149709400-149733000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr6:149709600-149750200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:149713800-149735400	Weak transcription	Small Intestine	intestine
7	chr6:149715600-149733600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr6:149717400-149733200	Strong transcription	HUES64 Cell Line	embryonic stem cell
9	chr6:149721800-149734000	Weak transcription	Right Ventricle	heart
10	chr6:149721800-149743800	Weak transcription	Lung	lung
11	chr6:149721800-149744800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr6:149721800-149745200	Weak transcription	Pancreas	Pancrea
13	chr6:149722000-149745000	Weak transcription	Colon Smooth Muscle	Colon
14	chr6:149725200-149733200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr6:149725200-149744600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr6:149725600-149734400	Weak transcription	HepG2	liver
17	chr6:149726600-149733400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr6:149727600-149733400	Strong transcription	Primary hematopoietic stem cells	blood
19	chr6:149728200-149734000	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr6:149728200-149744600	Weak transcription	Fetal Intestine Small	intestine
21	chr6:149728800-149733400	Strong transcription	Primary T helper cells fromperipheralblood	blood
22	chr6:149729400-149733400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr6:149729400-149733600	Strong transcription	Primary monocytes fromperipheralblood	blood
24	chr6:149729400-149734000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr6:149729800-149735000	Enhancers	Fetal Heart	heart
26	chr6:149730000-149733200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr6:149730200-149733000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
28	chr6:149730200-149733000	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr6:149730200-149733200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr6:149730200-149733400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr6:149730200-149733800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr6:149730200-149735600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr6:149730400-149733200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr6:149730400-149733200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr6:149730400-149733400	Strong transcription	HUES6 Cell Line	embryonic stem cell
36	chr6:149730400-149733400	Strong transcription	Rectal Mucosa Donor 29	rectum
37	chr6:149730400-149733400	Strong transcription	HMEC	breast
38	chr6:149730400-149735600	Strong transcription	Fetal Thymus	thymus
39	chr6:149730600-149733000	Strong transcription	Primary T cells fromperipheralblood	blood
40	chr6:149730600-149733600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr6:149730600-149744400	Weak transcription	NHDF-Ad	bronchial
42	chr6:149730800-149733600	Strong transcription	Primary T cells from cord blood	blood
43	chr6:149730800-149735000	Strong transcription	Muscle Satellite Cultured Cells	--
44	chr6:149731200-149733000	Weak transcription	NHEK	skin
45	chr6:149731200-149733600	Weak transcription	Fetal Kidney	kidney
46	chr6:149731400-149734200	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr6:149731400-149734400	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr6:149731400-149734600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr6:149731400-149734800	Weak transcription	Fetal Brain Male	brain
50	chr6:149731400-149736600	Weak transcription	Fetal Stomach	stomach

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