Variant report

Variant	rs73779376
Chromosome Location	chr6:149794558-149794559
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149637666..149639444-chr6:149793847..149796038,2	K562	blood:
2	chr6:149792520..149794344-chr6:149794518..149797030,2	K562	blood:

Variant related genes	Relation type
ENSG00000055208	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs17085985	1.00[EUR][1000 genomes]
rs17086054	1.00[EUR][1000 genomes]
rs34024129	1.00[EUR][1000 genomes]
rs35391071	1.00[EUR][1000 genomes]
rs35507156	1.00[EUR][1000 genomes]
rs55763048	1.00[EUR][1000 genomes]
rs56126528	1.00[EUR][1000 genomes]
rs56390023	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56836556	1.00[EUR][1000 genomes]
rs57234155	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57240808	1.00[EUR][1000 genomes]
rs58467138	1.00[EUR][1000 genomes]
rs59181586	1.00[EUR][1000 genomes]
rs59582367	1.00[EUR][1000 genomes]
rs60598581	1.00[EUR][1000 genomes]
rs60923183	1.00[EUR][1000 genomes]
rs6926168	1.00[EUR][1000 genomes]
rs6926360	1.00[EUR][1000 genomes]
rs6934491	1.00[EUR][1000 genomes]
rs73604793	1.00[EUR][1000 genomes]
rs73779304	1.00[EUR][1000 genomes]
rs73779305	1.00[EUR][1000 genomes]
rs73779307	1.00[EUR][1000 genomes]
rs73779311	1.00[EUR][1000 genomes]
rs73779312	1.00[EUR][1000 genomes]
rs73779313	1.00[EUR][1000 genomes]
rs73779314	1.00[EUR][1000 genomes]
rs73779330	1.00[EUR][1000 genomes]
rs73779332	1.00[AMR][1000 genomes]
rs73779333	1.00[EUR][1000 genomes]
rs73779345	1.00[EUR][1000 genomes]
rs73779346	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73779354	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73779366	1.00[EUR][1000 genomes]
rs73779373	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7740647	1.00[EUR][1000 genomes]
rs7760102	1.00[EUR][1000 genomes]
rs7761612	1.00[EUR][1000 genomes]
rs935386	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530444	chr6:149654540-149848997	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv470866	chr6:149744632-149806552	Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv464076	chr6:149755695-149798835	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv604846	chr6:149755695-149798835	ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv1832313	chr6:149789511-149840750	Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149776800-149802000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr6:149782200-149802000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr6:149783200-149802400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr6:149785800-149794600	Weak transcription	Gastric	stomach
5	chr6:149785800-149794800	Weak transcription	Right Atrium	heart
6	chr6:149788200-149795200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr6:149788400-149794600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr6:149789400-149806000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr6:149789600-149798400	Genic enhancers	Primary T cells fromperipheralblood	blood
10	chr6:149789800-149795200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr6:149790000-149796000	Genic enhancers	Primary T helper cells fromperipheralblood	blood
12	chr6:149790200-149802000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr6:149790400-149795000	Weak transcription	Stomach Smooth Muscle	stomach
14	chr6:149790400-149802200	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr6:149790600-149795600	Strong transcription	Primary monocytes fromperipheralblood	blood
16	chr6:149790800-149795600	Strong transcription	Monocytes-CD14+_RO01746	blood
17	chr6:149791000-149794600	Weak transcription	Lung	lung
18	chr6:149791000-149799000	Genic enhancers	Primary B cells from cord blood	blood
19	chr6:149792000-149796400	Genic enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr6:149792000-149800200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
21	chr6:149792400-149795200	Flanking Active TSS	GM12878-XiMat	blood
22	chr6:149792600-149795400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr6:149792600-149803000	Weak transcription	Fetal Brain Female	brain
24	chr6:149792800-149796200	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
25	chr6:149792800-149797000	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
26	chr6:149793200-149801800	Weak transcription	Thymus	Thymus
27	chr6:149793400-149795000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
28	chr6:149793400-149795400	Enhancers	Primary T cells from cord blood	blood
29	chr6:149793400-149795400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
30	chr6:149793400-149796600	Transcr. at gene 5' and 3'	Primary T regulatory cells fromperipheralblood	blood
31	chr6:149793600-149795000	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr6:149793800-149795400	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
33	chr6:149794000-149795000	Bivalent Enhancer	Fetal Muscle Leg	muscle
34	chr6:149794000-149795200	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr6:149794000-149796000	Enhancers	Fetal Thymus	thymus
36	chr6:149794200-149794600	Active TSS	Colonic Mucosa	Colon
37	chr6:149794200-149794600	Flanking Active TSS	Fetal Intestine Small	intestine
38	chr6:149794200-149794600	Active TSS	Rectal Mucosa Donor 29	rectum
39	chr6:149794200-149794600	Flanking Active TSS	Stomach Mucosa	stomach
40	chr6:149794200-149794800	Enhancers	Cortex derived primary cultured neurospheres	brain
41	chr6:149794200-149794800	Flanking Active TSS	Fetal Intestine Large	intestine
42	chr6:149794200-149794800	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
43	chr6:149794200-149794800	Bivalent Enhancer	HUVEC	blood vessel
44	chr6:149794200-149795000	Enhancers	Esophagus	oesophagus
45	chr6:149794200-149795000	Flanking Active TSS	HepG2	liver
46	chr6:149794200-149795200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
47	chr6:149794200-149795200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
48	chr6:149794200-149795400	Flanking Active TSS	Hela-S3	cervix
49	chr6:149794200-149795800	Enhancers	Adipose Nuclei	Adipose
50	chr6:149794200-149795800	Flanking Active TSS	Duodenum Mucosa	Duodenum

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