Variant report

Variant	rs73779346
Chromosome Location	chr6:149750325-149750326
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:17)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:17 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:149380842..149383187-chr6:149749461..149751628,2	MCF-7	breast:
2	chr6:149745176..149748304-chr6:149748732..149751749,4	MCF-7	breast:
3	chr6:149749225..149751406-chr6:149752259..149754784,2	K562	blood:
4	chr6:149381576..149384224-chr6:149749932..149753109,3	MCF-7	breast:
5	chr6:149748841..149750725-chr6:149751621..149753759,2	K562	blood:
6	chr6:149749032..149751401-chr6:149754918..149757804,2	K562	blood:
7	chr6:149398184..149404330-chr6:149748783..149757211,17	MCF-7	breast:
8	chr6:149638278..149640828-chr6:149750311..149753449,4	MCF-7	breast:
9	chr6:149352319..149353862-chr6:149749427..149751302,2	MCF-7	breast:
10	chr6:149744819..149747181-chr6:149748180..149751163,2	MCF-7	breast:
11	chr6:149394698..149396657-chr6:149749436..149751094,2	MCF-7	breast:
12	chr6:149748430..149751387-chr6:149751741..149754089,3	MCF-7	breast:
13	chr6:149742080..149743974-chr6:149748766..149751309,2	MCF-7	breast:
14	chr6:149638351..149641682-chr6:149748296..149751639,3	MCF-7	breast:
15	chr6:149407753..149410844-chr6:149747576..149751159,3	MCF-7	breast:
16	chr6:149351119..149355583-chr6:149748923..149756337,13	MCF-7	breast:
17	chr6:149703892..149707802-chr6:149748749..149751962,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000236591	Chromatin interaction
ENSG00000055208	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs17085985	1.00[EUR][1000 genomes]
rs17086054	1.00[EUR][1000 genomes]
rs34024129	1.00[EUR][1000 genomes]
rs35391071	1.00[EUR][1000 genomes]
rs35507156	1.00[EUR][1000 genomes]
rs55763048	1.00[EUR][1000 genomes]
rs56126528	1.00[EUR][1000 genomes]
rs56390023	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56836556	1.00[EUR][1000 genomes]
rs57234155	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57240808	1.00[EUR][1000 genomes]
rs58467138	1.00[EUR][1000 genomes]
rs59181586	1.00[EUR][1000 genomes]
rs59582367	1.00[EUR][1000 genomes]
rs60598581	1.00[EUR][1000 genomes]
rs60923183	1.00[EUR][1000 genomes]
rs6926168	1.00[EUR][1000 genomes]
rs6926360	1.00[EUR][1000 genomes]
rs6934491	1.00[EUR][1000 genomes]
rs73604793	1.00[EUR][1000 genomes]
rs73779304	1.00[EUR][1000 genomes]
rs73779305	1.00[EUR][1000 genomes]
rs73779307	1.00[EUR][1000 genomes]
rs73779311	1.00[EUR][1000 genomes]
rs73779312	1.00[EUR][1000 genomes]
rs73779313	1.00[EUR][1000 genomes]
rs73779314	1.00[EUR][1000 genomes]
rs73779330	1.00[EUR][1000 genomes]
rs73779332	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73779333	1.00[EUR][1000 genomes]
rs73779345	1.00[EUR][1000 genomes]
rs73779354	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73779366	1.00[EUR][1000 genomes]
rs73779373	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73779376	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7740647	1.00[EUR][1000 genomes]
rs7760102	1.00[EUR][1000 genomes]
rs7761612	1.00[EUR][1000 genomes]
rs935386	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522875	chr6:149643709-149762537	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv530444	chr6:149654540-149848997	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv517606	chr6:149744632-149755695	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv470866	chr6:149744632-149806552	Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv5533	chr6:149748047-149793072	Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149745400-149750400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:149745600-149752800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:149745600-149752800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr6:149745600-149752800	Weak transcription	HSMM	muscle
5	chr6:149745600-149753000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr6:149745600-149753000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:149745600-149753000	Weak transcription	Fetal Muscle Leg	muscle
8	chr6:149746800-149753000	Weak transcription	Placenta	Placenta
9	chr6:149746800-149762000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr6:149748800-149753200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr6:149749400-149753400	Weak transcription	HSMMtube	muscle
12	chr6:149749800-149764400	Weak transcription	Right Atrium	heart
13	chr6:149750200-149750600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr6:149750200-149750800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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